miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 27265 0.66 0.558192
Target:  5'- --cGCGUCGaauuggccCGaCUGCGCGagGCCGAGc -3'
miRNA:   3'- gcaUGUAGC--------GC-GACGCGCagCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 37917 0.66 0.558192
Target:  5'- aCGaACAgCGgGCgcagGCGCGcCGCCGGc -3'
miRNA:   3'- -GCaUGUaGCgCGa---CGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 12177 0.66 0.547449
Target:  5'- aCGUAUAaCG-GCacGCGCGUCGCCa-- -3'
miRNA:   3'- -GCAUGUaGCgCGa-CGCGCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 37812 0.66 0.547449
Target:  5'- aCG-ACGggCGCGCauccgGCGCucauGUCGCCGAc -3'
miRNA:   3'- -GCaUGUa-GCGCGa----CGCG----CAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 19061 0.66 0.547449
Target:  5'- aCGcGCcgCGCGgcCUGCGCG-CGCUGGu -3'
miRNA:   3'- -GCaUGuaGCGC--GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 30673 0.66 0.547449
Target:  5'- aGUGCAUCcUGCaUGCGCGggcagGCCGGc -3'
miRNA:   3'- gCAUGUAGcGCG-ACGCGCag---CGGCUu -5'
24329 3' -57.7 NC_005263.2 + 2253 0.66 0.545308
Target:  5'- uGUACGUguaguuguucgaGCGCaGCGCGuUCGCCGu- -3'
miRNA:   3'- gCAUGUAg-----------CGCGaCGCGC-AGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 3313 0.66 0.536772
Target:  5'- gCGcgGCcgCGCGguguucaacguCUGCGCGcCGCCGGc -3'
miRNA:   3'- -GCa-UGuaGCGC-----------GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 10650 0.66 0.536772
Target:  5'- aGUACAcauggacgcCGCGCagaccGCGCG-CGCCGAc -3'
miRNA:   3'- gCAUGUa--------GCGCGa----CGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 41487 0.66 0.536772
Target:  5'- -cUGCucgacCGCGCcgaGCGCGcCGCCGAAc -3'
miRNA:   3'- gcAUGua---GCGCGa--CGCGCaGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 3174 0.66 0.536772
Target:  5'- uCGUGg--CGCggaauaacugccGCUGCGCGUCGgCGAGc -3'
miRNA:   3'- -GCAUguaGCG------------CGACGCGCAGCgGCUU- -5'
24329 3' -57.7 NC_005263.2 + 31254 0.66 0.536772
Target:  5'- ------cCGCGCgGCGCGgCGCCGGg -3'
miRNA:   3'- gcauguaGCGCGaCGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 19090 0.66 0.530401
Target:  5'- --gGCGUCGCGgUGCGCaacgcacugccggucGgccgCGCCGAg -3'
miRNA:   3'- gcaUGUAGCGCgACGCG---------------Ca---GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 6054 0.66 0.526169
Target:  5'- uCGUugGcggCGCGCUucaCGCG-CGCCGAc -3'
miRNA:   3'- -GCAugUa--GCGCGAc--GCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 27128 0.66 0.515645
Target:  5'- aCGcGCAggCGCGCaGcCGCGUCGgCGAu -3'
miRNA:   3'- -GCaUGUa-GCGCGaC-GCGCAGCgGCUu -5'
24329 3' -57.7 NC_005263.2 + 30347 0.66 0.515645
Target:  5'- gCGUGCcgagcgcggcCGCGCUGcCGCcggCGCCGAGu -3'
miRNA:   3'- -GCAUGua--------GCGCGAC-GCGca-GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 32550 0.66 0.505207
Target:  5'- --gGCGUUcaGCGC-GCGCGUcugCGCCGAGa -3'
miRNA:   3'- gcaUGUAG--CGCGaCGCGCA---GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 4730 0.66 0.505207
Target:  5'- gGUACGUCGCGCc-CGCGagcaCGCCa-- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCa---GCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 4894 0.66 0.505207
Target:  5'- uGUaGCG-CGCGCUGCGauagcgcgcCGUCGCCa-- -3'
miRNA:   3'- gCA-UGUaGCGCGACGC---------GCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 47260 0.66 0.505207
Target:  5'- gGUACGcugucCGCGCUcgguagugacGUGCG-CGCCGAAg -3'
miRNA:   3'- gCAUGUa----GCGCGA----------CGCGCaGCGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.