miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24330 5' -56 NC_005263.2 + 35935 0.66 0.644938
Target:  5'- uCGCGAcacGGcCGCgAUCGUugacgcugcgugcaaGGCGCUCGAc- -3'
miRNA:   3'- -GCGCU---UC-GUG-UAGCG---------------CCGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 952 0.66 0.640485
Target:  5'- cCGCGAgcGGCgACGUaGCGGCGgUCGc-- -3'
miRNA:   3'- -GCGCU--UCG-UGUAgCGCCGCgAGCuua -5'
24330 5' -56 NC_005263.2 + 32022 0.66 0.640485
Target:  5'- gGCGGcgAGCGCAaauggaacgaUCGCGGCgGCaCGGAc -3'
miRNA:   3'- gCGCU--UCGUGU----------AGCGCCG-CGaGCUUa -5'
24330 5' -56 NC_005263.2 + 6584 0.66 0.637144
Target:  5'- uGCGcAGGCGCAaguagucgacgcgaUCGCGuucggcggcGCGCUCGGc- -3'
miRNA:   3'- gCGC-UUCGUGU--------------AGCGC---------CGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 2433 0.66 0.629347
Target:  5'- uCGaCGAguuguuucuGGCGCAaCGCGGCcaGCUCGGc- -3'
miRNA:   3'- -GC-GCU---------UCGUGUaGCGCCG--CGAGCUua -5'
24330 5' -56 NC_005263.2 + 46684 0.66 0.629347
Target:  5'- gCGCGcAGC-CAagGCGGCGCgcgcCGAc- -3'
miRNA:   3'- -GCGCuUCGuGUagCGCCGCGa---GCUua -5'
24330 5' -56 NC_005263.2 + 41070 0.66 0.629347
Target:  5'- gCGCGAuGCGcCAUcCGuCGGCGCgCGAc- -3'
miRNA:   3'- -GCGCUuCGU-GUA-GC-GCCGCGaGCUua -5'
24330 5' -56 NC_005263.2 + 7227 0.66 0.618212
Target:  5'- gGCGAcGGCGCcaUGCGGUGCacgCGAGg -3'
miRNA:   3'- gCGCU-UCGUGuaGCGCCGCGa--GCUUa -5'
24330 5' -56 NC_005263.2 + 22719 0.66 0.618212
Target:  5'- gGuCGAGGC-C-UCGCGGCGCaUGAGc -3'
miRNA:   3'- gC-GCUUCGuGuAGCGCCGCGaGCUUa -5'
24330 5' -56 NC_005263.2 + 16355 0.66 0.618212
Target:  5'- aGaCGAAGCGCGcggcCGCGuCGCUCGGc- -3'
miRNA:   3'- gC-GCUUCGUGUa---GCGCcGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 47170 0.66 0.618212
Target:  5'- uGC-AAGCGCAUagaGCGGCGCacgcuaCGAGg -3'
miRNA:   3'- gCGcUUCGUGUAg--CGCCGCGa-----GCUUa -5'
24330 5' -56 NC_005263.2 + 9455 0.66 0.607089
Target:  5'- gGCGAGGUugGCGUCGauGCGCgacgCGGc- -3'
miRNA:   3'- gCGCUUCG--UGUAGCgcCGCGa---GCUua -5'
24330 5' -56 NC_005263.2 + 15263 0.66 0.595988
Target:  5'- uGCuGcGGCuuGUCGCGGCGCU-GAAg -3'
miRNA:   3'- gCG-CuUCGugUAGCGCCGCGAgCUUa -5'
24330 5' -56 NC_005263.2 + 9182 0.66 0.595988
Target:  5'- gCGCGAcgucgAGCuCggCGCGGCGCcCGGc- -3'
miRNA:   3'- -GCGCU-----UCGuGuaGCGCCGCGaGCUua -5'
24330 5' -56 NC_005263.2 + 36107 0.66 0.595988
Target:  5'- uCGCGuugauGGcCGCGUCGUacuuGCGCUCGAu- -3'
miRNA:   3'- -GCGCu----UC-GUGUAGCGc---CGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 12486 0.66 0.595988
Target:  5'- gGCGgcGCGCAUUGCGGCauccugcgcGC-CGGc- -3'
miRNA:   3'- gCGCuuCGUGUAGCGCCG---------CGaGCUua -5'
24330 5' -56 NC_005263.2 + 32511 0.66 0.595988
Target:  5'- aCGCGAuaagcgccAGCACGUCgaacGCGGCGacugUCGGc- -3'
miRNA:   3'- -GCGCU--------UCGUGUAG----CGCCGCg---AGCUua -5'
24330 5' -56 NC_005263.2 + 13828 0.66 0.595988
Target:  5'- cCGCGAGcacuucguGCAUcgCGCGGUaCUCGGGc -3'
miRNA:   3'- -GCGCUU--------CGUGuaGCGCCGcGAGCUUa -5'
24330 5' -56 NC_005263.2 + 34149 0.66 0.584919
Target:  5'- cCGCGA---ACGUCGCGccgcguccuauGCGCUCGAc- -3'
miRNA:   3'- -GCGCUucgUGUAGCGC-----------CGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 2683 0.66 0.584919
Target:  5'- uGUGGuAGCugAUcgCGCGGCcGCUCGGc- -3'
miRNA:   3'- gCGCU-UCGugUA--GCGCCG-CGAGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.