miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 48638 0.66 0.763798
Target:  5'- cCUUGCGCGG-GUGCcAUCCagaucCGCGAc -3'
miRNA:   3'- -GAACGUGCCgCGCGcUAGGgc---GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 53257 0.66 0.763798
Target:  5'- --cGCG-GGCGCGUGucuggcuugcuGUCCCGCGgCGc -3'
miRNA:   3'- gaaCGUgCCGCGCGC-----------UAGGGCGC-GCu -5'
24335 3' -60.5 NC_005264.1 + 49342 0.66 0.763798
Target:  5'- -gUGUACGaGgGuCGCGGUuggcaCUCGCGCGAc -3'
miRNA:   3'- gaACGUGC-CgC-GCGCUA-----GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 112268 0.66 0.763798
Target:  5'- --aGCGCcGCGUGCGcuUCCCGCacGCGc -3'
miRNA:   3'- gaaCGUGcCGCGCGCu-AGGGCG--CGCu -5'
24335 3' -60.5 NC_005264.1 + 48665 0.66 0.763798
Target:  5'- --gGCACGGgGgGCGAggagaUCUgGgCGCGAg -3'
miRNA:   3'- gaaCGUGCCgCgCGCU-----AGGgC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 10557 0.66 0.761971
Target:  5'- aCUUGCGCaGGCGCGCaacauaagcaaaAUCCUGgccaagucCGCGAc -3'
miRNA:   3'- -GAACGUG-CCGCGCGc-----------UAGGGC--------GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 115276 0.66 0.754621
Target:  5'- -cUGCAguauUGuaGCGCGAcaacgacgUCCCGCGCa- -3'
miRNA:   3'- gaACGU----GCcgCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 136362 0.66 0.754621
Target:  5'- --cGCugGGCGCug---CCgGCGCGAa -3'
miRNA:   3'- gaaCGugCCGCGcgcuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 142280 0.66 0.754621
Target:  5'- --cGCGCuGGCagaGCGCGAuacauaUCUCGCGCu- -3'
miRNA:   3'- gaaCGUG-CCG---CGCGCU------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 126300 0.66 0.754621
Target:  5'- --cGCuuuCgGGCGCGCGGccgauggcUCCUGCGCc- -3'
miRNA:   3'- gaaCGu--G-CCGCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 4498 0.66 0.754621
Target:  5'- --gGCGCGGUGCGgcCGcuuguGUUCCGCGUGc -3'
miRNA:   3'- gaaCGUGCCGCGC--GC-----UAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 94067 0.66 0.753698
Target:  5'- --cGCuuUGGCGC-CGGcaacaugUCCCGCGUGAc -3'
miRNA:   3'- gaaCGu-GCCGCGcGCU-------AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 91222 0.66 0.745343
Target:  5'- --cGCGCauuCGCGCGAUagCCCGCGUa- -3'
miRNA:   3'- gaaCGUGcc-GCGCGCUA--GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 129852 0.66 0.745343
Target:  5'- --aGCGCccgauGGCgauauGCGCGAgCCCGCGUGu -3'
miRNA:   3'- gaaCGUG-----CCG-----CGCGCUaGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 132216 0.66 0.745343
Target:  5'- --cGCGCuGCGCGCGGaUCCGuCGCc- -3'
miRNA:   3'- gaaCGUGcCGCGCGCUaGGGC-GCGcu -5'
24335 3' -60.5 NC_005264.1 + 6310 0.66 0.745343
Target:  5'- aCUUGCGCGGCGa--GGcUUCGCGUGGc -3'
miRNA:   3'- -GAACGUGCCGCgcgCUaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 59025 0.66 0.745343
Target:  5'- --gGCA-GGCGCGUcaggucGGUCuCCGCGCa- -3'
miRNA:   3'- gaaCGUgCCGCGCG------CUAG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 129032 0.66 0.745343
Target:  5'- cCUUGC-CGGCGaGcCGGUCCaaagcggcgUGCGCGGc -3'
miRNA:   3'- -GAACGuGCCGCgC-GCUAGG---------GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 13189 0.66 0.745343
Target:  5'- --cGCGCuGCGCGCGGaUCCGuCGCc- -3'
miRNA:   3'- gaaCGUGcCGCGCGCUaGGGC-GCGcu -5'
24335 3' -60.5 NC_005264.1 + 10826 0.66 0.745343
Target:  5'- --aGCGCccgauGGCgauauGCGCGAgCCCGCGUGu -3'
miRNA:   3'- gaaCGUG-----CCG-----CGCGCUaGGGCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.