Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 96227 | 0.66 | 0.828143 |
Target: 5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3' miRNA: 3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 31467 | 0.66 | 0.828143 |
Target: 5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3' miRNA: 3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 150494 | 0.66 | 0.828143 |
Target: 5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3' miRNA: 3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 161441 | 0.66 | 0.828143 |
Target: 5'- gGCCaggGGuCGuACGgGaaUGcGACGCGCGCa -3' miRNA: 3'- -CGGca-CCuGC-UGCgC--AC-CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 151852 | 0.66 | 0.828143 |
Target: 5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3' miRNA: 3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 101587 | 0.66 | 0.828143 |
Target: 5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3' miRNA: 3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 29274 | 0.66 | 0.828143 |
Target: 5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3' miRNA: 3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 92043 | 0.66 | 0.820038 |
Target: 5'- -aUGUGGAgGuCG-GUGGGC-CGCGCu -3' miRNA: 3'- cgGCACCUgCuGCgCACCUGcGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 136776 | 0.66 | 0.820038 |
Target: 5'- aGCCcaGUGaGuccuuuCGGCGCGUGGcCGgGCGg -3' miRNA: 3'- -CGG--CAC-Cu-----GCUGCGCACCuGCgCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 87625 | 0.66 | 0.811778 |
Target: 5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3' miRNA: 3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 111583 | 0.66 | 0.811778 |
Target: 5'- cGCCGUGGuguuCuCGUGGugGCugcacaacGCGCu -3' miRNA: 3'- -CGGCACCugcuGcGCACCugCG--------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 103136 | 0.66 | 0.803369 |
Target: 5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3' miRNA: 3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 1607 | 0.66 | 0.803369 |
Target: 5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3' miRNA: 3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 58614 | 0.66 | 0.803369 |
Target: 5'- uGUCGaauuccGAUGACcCGUGcGACGCGUGCu -3' miRNA: 3'- -CGGCac----CUGCUGcGCAC-CUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 120634 | 0.66 | 0.803369 |
Target: 5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3' miRNA: 3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 94593 | 0.66 | 0.798256 |
Target: 5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3' miRNA: 3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 35512 | 0.66 | 0.79482 |
Target: 5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3' miRNA: 3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 151536 | 0.66 | 0.79482 |
Target: 5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3' miRNA: 3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 23246 | 0.66 | 0.79482 |
Target: 5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3' miRNA: 3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 95444 | 0.66 | 0.79482 |
Target: 5'- cGUCGUGGAauaCGcuacCGCGccGGCGgGCGCa -3' miRNA: 3'- -CGGCACCU---GCu---GCGCacCUGCgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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