miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 161441 0.66 0.828143
Target:  5'- gGCCaggGGuCGuACGgGaaUGcGACGCGCGCa -3'
miRNA:   3'- -CGGca-CCuGC-UGCgC--AC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 151852 0.66 0.828143
Target:  5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3'
miRNA:   3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 29274 0.66 0.828143
Target:  5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3'
miRNA:   3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 150494 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 31467 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 96227 0.66 0.828143
Target:  5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3'
miRNA:   3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 101587 0.66 0.828143
Target:  5'- cGCCGaGGcGCGcCGUGagcUGGA-GCGCGCc -3'
miRNA:   3'- -CGGCaCC-UGCuGCGC---ACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 92043 0.66 0.820038
Target:  5'- -aUGUGGAgGuCG-GUGGGC-CGCGCu -3'
miRNA:   3'- cgGCACCUgCuGCgCACCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 136776 0.66 0.820038
Target:  5'- aGCCcaGUGaGuccuuuCGGCGCGUGGcCGgGCGg -3'
miRNA:   3'- -CGG--CAC-Cu-----GCUGCGCACCuGCgCGCg -5'
24343 5' -59.7 NC_005264.1 + 111583 0.66 0.811778
Target:  5'- cGCCGUGGuguuCuCGUGGugGCugcacaacGCGCu -3'
miRNA:   3'- -CGGCACCugcuGcGCACCugCG--------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 87625 0.66 0.811778
Target:  5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3'
miRNA:   3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 58614 0.66 0.803369
Target:  5'- uGUCGaauuccGAUGACcCGUGcGACGCGUGCu -3'
miRNA:   3'- -CGGCac----CUGCUGcGCAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 1607 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 103136 0.66 0.803369
Target:  5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3'
miRNA:   3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5'
24343 5' -59.7 NC_005264.1 + 120634 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 94593 0.66 0.798256
Target:  5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3'
miRNA:   3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 35512 0.66 0.79482
Target:  5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3'
miRNA:   3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 151536 0.66 0.79482
Target:  5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3'
miRNA:   3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 23246 0.66 0.79482
Target:  5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3'
miRNA:   3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 95444 0.66 0.79482
Target:  5'- cGUCGUGGAauaCGcuacCGCGccGGCGgGCGCa -3'
miRNA:   3'- -CGGCACCU---GCu---GCGCacCUGCgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.