miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 99987 0.7 0.567508
Target:  5'- cUCGUGGACGAgGCGacGAaaCGCGaCGCg -3'
miRNA:   3'- cGGCACCUGCUgCGCacCU--GCGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 97525 0.7 0.615965
Target:  5'- uGCCGcGGcUGugGCGUGG-CaGCGgGCa -3'
miRNA:   3'- -CGGCaCCuGCugCGCACCuG-CGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 96227 0.66 0.828143
Target:  5'- gGCCGc-GACGGCGCc-GGcaACGCgGCGCa -3'
miRNA:   3'- -CGGCacCUGCUGCGcaCC--UGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 95444 0.66 0.79482
Target:  5'- cGUCGUGGAauaCGcuacCGCGccGGCGgGCGCa -3'
miRNA:   3'- -CGGCACCU---GCu---GCGCacCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 95357 0.69 0.632542
Target:  5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3'
miRNA:   3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5'
24343 5' -59.7 NC_005264.1 + 94593 0.66 0.798256
Target:  5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3'
miRNA:   3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 94414 0.67 0.740995
Target:  5'- cGgCGcGGACugcgcgaucgcuGACGUG-GGAUGCGCGUa -3'
miRNA:   3'- -CgGCaCCUG------------CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 93823 0.68 0.731675
Target:  5'- cGCCGUGGcacaguACGAUgGCGacagGGcCGCGgGCc -3'
miRNA:   3'- -CGGCACC------UGCUG-CGCa---CCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 92043 0.66 0.820038
Target:  5'- -aUGUGGAgGuCG-GUGGGC-CGCGCu -3'
miRNA:   3'- cgGCACCUgCuGCgCACCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 91892 0.69 0.654963
Target:  5'- --gGUGGuuggccGCGGCaGCGaUGGGCGgGCGCg -3'
miRNA:   3'- cggCACC------UGCUG-CGC-ACCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 91290 0.67 0.753895
Target:  5'- cGCCGUucaacucugucaccaGGGCGAUGCccGUaccGGAgGCGCuGCg -3'
miRNA:   3'- -CGGCA---------------CCUGCUGCG--CA---CCUgCGCG-CG- -5'
24343 5' -59.7 NC_005264.1 + 87625 0.66 0.811778
Target:  5'- cGCCGcgcagGGcCGAugcagcCGCGUGGG-GCGCGg -3'
miRNA:   3'- -CGGCa----CCuGCU------GCGCACCUgCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 87578 0.7 0.567508
Target:  5'- cGCCGacgaGGACGaacacgGCGCGUGGuCGCGUu- -3'
miRNA:   3'- -CGGCa---CCUGC------UGCGCACCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 87429 0.67 0.740995
Target:  5'- cGCCGUacacugcccGCGGcCGCGcagacGGugGCGCGCa -3'
miRNA:   3'- -CGGCAcc-------UGCU-GCGCa----CCugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 87040 0.68 0.722277
Target:  5'- cGCCuacGGACGGCGaCGaccUGGAgGCgaGCGCg -3'
miRNA:   3'- -CGGca-CCUGCUGC-GC---ACCUgCG--CGCG- -5'
24343 5' -59.7 NC_005264.1 + 86154 0.68 0.703279
Target:  5'- aCgGUGGGCGACaGCcUGGugGC-CGUg -3'
miRNA:   3'- cGgCACCUGCUG-CGcACCugCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 84320 0.68 0.727925
Target:  5'- aCCG-GGcACGGCGCGaUGGuuacuggccucacCGCGUGCa -3'
miRNA:   3'- cGGCaCC-UGCUGCGC-ACCu------------GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 80631 0.67 0.768403
Target:  5'- cCCGaGGACGA----UGGACGCGCGg -3'
miRNA:   3'- cGGCaCCUGCUgcgcACCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 80189 0.67 0.776442
Target:  5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3'
miRNA:   3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 79399 0.74 0.358261
Target:  5'- cGCCGcGGGCGugGCGaGGcCGCG-GCg -3'
miRNA:   3'- -CGGCaCCUGCugCGCaCCuGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.