miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24344 5' -54.7 NC_005264.1 + 159016 0.67 0.926299
Target:  5'- aGGAGcagGUCUCCGCGcgCAgGGAgCACc -3'
miRNA:   3'- -CCUCaa-CGGAGGUGCa-GUgCCU-GUGc -5'
24344 5' -54.7 NC_005264.1 + 157632 0.66 0.95389
Target:  5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3'
miRNA:   3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 153407 0.66 0.963977
Target:  5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3'
miRNA:   3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5'
24344 5' -54.7 NC_005264.1 + 152727 1.12 0.003211
Target:  5'- gGGAGUUGCCUCCACGUCACGGACACGg -3'
miRNA:   3'- -CCUCAACGGAGGUGCAGUGCCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 152225 0.66 0.953498
Target:  5'- uGGGGcacuuaaUGCCUCgCGCGauauggaUCGCGGuCGCGg -3'
miRNA:   3'- -CCUCa------ACGGAG-GUGC-------AGUGCCuGUGC- -5'
24344 5' -54.7 NC_005264.1 + 150898 0.69 0.861861
Target:  5'- uGGAGUcgcuUGCCUCCAUcuaCcCGGACAUa -3'
miRNA:   3'- -CCUCA----ACGGAGGUGca-GuGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 146628 0.67 0.936425
Target:  5'- aGGGGUcGUCUCCGCGUguCGuGAUAg- -3'
miRNA:   3'- -CCUCAaCGGAGGUGCAguGC-CUGUgc -5'
24344 5' -54.7 NC_005264.1 + 146430 0.67 0.941137
Target:  5'- cGAGcggcccUUGCCUCCccgagugccaauGCGcCACGGGCAUc -3'
miRNA:   3'- cCUC------AACGGAGG------------UGCaGUGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 127834 0.67 0.925768
Target:  5'- --cGUUGCCUCCGCGgcggCcgGCGGucuagaacccggcGCGCGa -3'
miRNA:   3'- ccuCAACGGAGGUGCa---G--UGCC-------------UGUGC- -5'
24344 5' -54.7 NC_005264.1 + 127079 0.66 0.95389
Target:  5'- -----cGCCUcuucacCCACGUCGCGGcCGCa -3'
miRNA:   3'- ccucaaCGGA------GGUGCAGUGCCuGUGc -5'
24344 5' -54.7 NC_005264.1 + 126772 0.69 0.869296
Target:  5'- cGGAaacggGCuCUCCGCGUCGgcaguCGGGCACu -3'
miRNA:   3'- -CCUcaa--CG-GAGGUGCAGU-----GCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 124120 0.67 0.926299
Target:  5'- gGGAGggGuCCUCUACGcCugGGG-GCGa -3'
miRNA:   3'- -CCUCaaC-GGAGGUGCaGugCCUgUGC- -5'
24344 5' -54.7 NC_005264.1 + 123106 0.68 0.903238
Target:  5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3'
miRNA:   3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5'
24344 5' -54.7 NC_005264.1 + 122195 0.69 0.854224
Target:  5'- cGGcGac-CCUCCGCGUCGCGacGGCGCGg -3'
miRNA:   3'- -CCuCaacGGAGGUGCAGUGC--CUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 121951 0.67 0.945617
Target:  5'- cGGAGUcGCCga-GCGagACGGACGgGa -3'
miRNA:   3'- -CCUCAaCGGaggUGCagUGCCUGUgC- -5'
24344 5' -54.7 NC_005264.1 + 119920 0.66 0.957689
Target:  5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3'
miRNA:   3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5'
24344 5' -54.7 NC_005264.1 + 117693 0.69 0.883533
Target:  5'- ----cUGCCUCCGCGUCGUGG-CGCc -3'
miRNA:   3'- ccucaACGGAGGUGCAGUGCCuGUGc -5'
24344 5' -54.7 NC_005264.1 + 114156 0.68 0.890325
Target:  5'- -cAGUUGaCCUCCACGUUgGCGGAgGuCGa -3'
miRNA:   3'- ccUCAAC-GGAGGUGCAG-UGCCUgU-GC- -5'
24344 5' -54.7 NC_005264.1 + 107756 0.81 0.294362
Target:  5'- cGAGUUGCCUCCGCGUCAauGGCcuCGu -3'
miRNA:   3'- cCUCAACGGAGGUGCAGUgcCUGu-GC- -5'
24344 5' -54.7 NC_005264.1 + 98540 0.71 0.758773
Target:  5'- -----gGCCUCUGCGgaggCAUGGACGCGa -3'
miRNA:   3'- ccucaaCGGAGGUGCa---GUGCCUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.