miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 24058 0.66 0.949947
Target:  5'- uGGCGGacacaGCCaacaGCACGGCcagGCGCAu -3'
miRNA:   3'- -CCGCCaa---UGGc---UGUGCCGaa-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 60899 0.66 0.949947
Target:  5'- cGCGGUgggGCCGACGCcgccaGUUUcGCGCGc -3'
miRNA:   3'- cCGCCAa--UGGCUGUGc----CGAA-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 88110 0.66 0.949947
Target:  5'- aGCGucgGCCGGCGCGGUUgcGUACGGg -3'
miRNA:   3'- cCGCcaaUGGCUGUGCCGAa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 136241 0.66 0.949947
Target:  5'- aGGUGGcgACgGACACGGCUcaugGguUAGc -3'
miRNA:   3'- -CCGCCaaUGgCUGUGCCGAa---CguGUU- -5'
24345 5' -54.5 NC_005264.1 + 73710 0.66 0.949947
Target:  5'- uGGCGccagUACCGA--CGGCcUUGCGCGGg -3'
miRNA:   3'- -CCGCca--AUGGCUguGCCG-AACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 33078 0.66 0.945604
Target:  5'- cGCGGUgcCCGGgGCGGauuucgUGCAUAu -3'
miRNA:   3'- cCGCCAauGGCUgUGCCga----ACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 67003 0.66 0.945604
Target:  5'- cGGCGaGUgcUGCCugGACggagcgGCGGCcUUGCGCAGg -3'
miRNA:   3'- -CCGC-CA--AUGG--CUG------UGCCG-AACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 139931 0.66 0.945604
Target:  5'- uGCGGgaauacgACCGACGCGGUgcugcuaucgUGCcCGAa -3'
miRNA:   3'- cCGCCaa-----UGGCUGUGCCGa---------ACGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 75064 0.66 0.94102
Target:  5'- cGGCGGaguaGCUGACGCGGagagGCAgGGu -3'
miRNA:   3'- -CCGCCaa--UGGCUGUGCCgaa-CGUgUU- -5'
24345 5' -54.5 NC_005264.1 + 61590 0.66 0.936194
Target:  5'- uGGaacaGcUUGCCGGcCACGGUcUGCACAAa -3'
miRNA:   3'- -CCg---CcAAUGGCU-GUGCCGaACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 53572 0.66 0.936194
Target:  5'- cGCGcagAgCGGCGCGGCUUGCGu-- -3'
miRNA:   3'- cCGCcaaUgGCUGUGCCGAACGUguu -5'
24345 5' -54.5 NC_005264.1 + 141468 0.66 0.934698
Target:  5'- cGGCGGggccucuuuccaccgGCCGAgGCGGCccgGgACGAa -3'
miRNA:   3'- -CCGCCaa-------------UGGCUgUGCCGaa-CgUGUU- -5'
24345 5' -54.5 NC_005264.1 + 118669 0.66 0.931123
Target:  5'- aGGuCGGUUACaagguuaGAUACGcGCUcGCGCGg -3'
miRNA:   3'- -CC-GCCAAUGg------CUGUGC-CGAaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 51851 0.66 0.931123
Target:  5'- cGCGGgcgucACCGACucuuCGGCgagGCugGAa -3'
miRNA:   3'- cCGCCaa---UGGCUGu---GCCGaa-CGugUU- -5'
24345 5' -54.5 NC_005264.1 + 64285 0.66 0.931123
Target:  5'- cGCGGgUGCCGAguauCGCGGCccacaGCGCGu -3'
miRNA:   3'- cCGCCaAUGGCU----GUGCCGaa---CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 76141 0.67 0.920247
Target:  5'- cGGCGGcaaagACCGcGCGCGGCgaGUaACGAa -3'
miRNA:   3'- -CCGCCaa---UGGC-UGUGCCGaaCG-UGUU- -5'
24345 5' -54.5 NC_005264.1 + 68154 0.67 0.920247
Target:  5'- aGGCGGUucgugcaacaucUGCau-CACGGCggGCACGu -3'
miRNA:   3'- -CCGCCA------------AUGgcuGUGCCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 98458 0.67 0.915032
Target:  5'- cGGCGGgauuugucaacccgGCCGGCACGcGCgaggGCAUc- -3'
miRNA:   3'- -CCGCCaa------------UGGCUGUGC-CGaa--CGUGuu -5'
24345 5' -54.5 NC_005264.1 + 385 0.67 0.914441
Target:  5'- uGGgGGgcagcGCCGGCGCGGUcgUGUACc- -3'
miRNA:   3'- -CCgCCaa---UGGCUGUGCCGa-ACGUGuu -5'
24345 5' -54.5 NC_005264.1 + 764 0.67 0.914441
Target:  5'- cGGCGGagccccUACgCGACACGGUucUUGCGg-- -3'
miRNA:   3'- -CCGCCa-----AUG-GCUGUGCCG--AACGUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.