miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 39732 0.67 0.481404
Target:  5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3'
miRNA:   3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 54920 0.66 0.517789
Target:  5'- uCGCGgCGCUGCUGGCgaacgGCUGCGa--- -3'
miRNA:   3'- -GCGCgGCGGCGGUCGa----CGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 10873 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 136193 0.67 0.481404
Target:  5'- aGCGCgG-CGCCGGC-GCCGCGcuAAGg -3'
miRNA:   3'- gCGCGgCgGCGGUCGaCGGCGCc-UUC- -5'
24349 3' -64.4 NC_005264.1 + 107660 0.66 0.564708
Target:  5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3'
miRNA:   3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 13425 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 102128 0.66 0.563757
Target:  5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3'
miRNA:   3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 13205 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 37866 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 1205 0.67 0.463681
Target:  5'- gGCGuCCGCgGCCAug-GCUGCGGGGu -3'
miRNA:   3'- gCGC-GGCGgCGGUcgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 94512 0.67 0.472501
Target:  5'- aGUGCaGCCGUCGGCca-CGUGGGAGg -3'
miRNA:   3'- gCGCGgCGGCGGUCGacgGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 10538 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 7050 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 92165 0.67 0.490388
Target:  5'- gGCGUaaaaauUGCCuGCCGGCggcGCCGCGGc-- -3'
miRNA:   3'- gCGCG------GCGG-CGGUCGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 5436 0.67 0.490388
Target:  5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3'
miRNA:   3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 144798 0.67 0.49945
Target:  5'- gGCGCCGCCGCUucGCgucgGCaCGCacuuggugucGGAAa -3'
miRNA:   3'- gCGCGGCGGCGGu-CGa---CG-GCG----------CCUUc -5'
24349 3' -64.4 NC_005264.1 + 126029 0.67 0.508584
Target:  5'- cCGCGCC-UCGCCuGC-GCCGCaGAGa -3'
miRNA:   3'- -GCGCGGcGGCGGuCGaCGGCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 5829 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 83390 0.66 0.545779
Target:  5'- aGCuGCCGCuCGUCGucuGCgcGCCGCGGGu- -3'
miRNA:   3'- gCG-CGGCG-GCGGU---CGa-CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.