miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 162694 0.77 0.117949
Target:  5'- gCGCGCUGCgCGCCGGCguuaaggcgGCCGCcgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGGUCGa--------CGGCG--CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 162214 0.72 0.264023
Target:  5'- uCGCGCUGCCuGCgAcGCggGCCGgCGGggGg -3'
miRNA:   3'- -GCGCGGCGG-CGgU-CGa-CGGC-GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 161398 0.7 0.343047
Target:  5'- --gGCCGgUGCUGGCUcCCGCGGAGGc -3'
miRNA:   3'- gcgCGGCgGCGGUCGAcGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 161292 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 160647 0.67 0.484988
Target:  5'- gCGCGCaugGgCGCCGGCaauggaggggcaacGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg--CgGCGGUCGa-------------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 159767 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 159686 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 158858 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 158758 0.67 0.481404
Target:  5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3'
miRNA:   3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 158503 0.7 0.342323
Target:  5'- gCGCGCUcaGCCGCCAggggcaggccugcGCUGUgGUGGAc- -3'
miRNA:   3'- -GCGCGG--CGGCGGU-------------CGACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 158234 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 157023 0.69 0.395664
Target:  5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3'
miRNA:   3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 156892 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 156388 0.76 0.143459
Target:  5'- cCGCGCCGCCgaggaguucuccGCCAGCgacgccGCCGCGaGAGu -3'
miRNA:   3'- -GCGCGGCGG------------CGGUCGa-----CGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 155960 0.68 0.428458
Target:  5'- uGCGCgGCucgcggaCGCUcuGGCUGCCGuCGGGAu -3'
miRNA:   3'- gCGCGgCG-------GCGG--UCGACGGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 155842 0.71 0.295016
Target:  5'- --aGCCGCCGCgGGCcacGCCGaGGAGGa -3'
miRNA:   3'- gcgCGGCGGCGgUCGa--CGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 155792 0.7 0.343047
Target:  5'- gGCGCCGUCGCCGcUUGCgCGCaGAAu -3'
miRNA:   3'- gCGCGGCGGCGGUcGACG-GCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 155333 0.69 0.396464
Target:  5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3'
miRNA:   3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 154927 0.66 0.545779
Target:  5'- aCGCGCgCGuuGCUAGCcagagCGUGGggGa -3'
miRNA:   3'- -GCGCG-GCggCGGUCGacg--GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 154614 0.72 0.252385
Target:  5'- cCGCGCUGgCGuacucggaCCAGCgGCCGCGGGGc -3'
miRNA:   3'- -GCGCGGCgGC--------GGUCGaCGGCGCCUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.