miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 98417 0.66 0.590599
Target:  5'- uCGCCUGGCGCuuacggacuaucuGAGCCaGUCGUGGagCUCg -3'
miRNA:   3'- -GUGGGCUGUG-------------CUCGG-CGGCGCCg-GAG- -5'
24350 3' -63.8 NC_005264.1 + 137509 0.66 0.585798
Target:  5'- aACUCGuC-CG-GCCGCCGgauuuuuugcuagguCGGCCUCg -3'
miRNA:   3'- gUGGGCuGuGCuCGGCGGC---------------GCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 115972 0.66 0.581962
Target:  5'- gCGCCCGACAgGGacgcugaacGCCagGCCGUGuGCgUCg -3'
miRNA:   3'- -GUGGGCUGUgCU---------CGG--CGGCGC-CGgAG- -5'
24350 3' -63.8 NC_005264.1 + 37126 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 102979 0.66 0.581962
Target:  5'- aGCUCaGCAUGA-CCGUgGCGGCCUg -3'
miRNA:   3'- gUGGGcUGUGCUcGGCGgCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 10827 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 126964 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 39104 0.66 0.581962
Target:  5'- uGCCCGuGCACGccuacguGuuGCUGCgcuucGGCCUCu -3'
miRNA:   3'- gUGGGC-UGUGCu------CggCGGCG-----CCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 100661 0.66 0.581962
Target:  5'- gGCCCGACGgGAGuuGC-GCGaGCUa- -3'
miRNA:   3'- gUGGGCUGUgCUCggCGgCGC-CGGag -5'
24350 3' -63.8 NC_005264.1 + 7938 0.66 0.581962
Target:  5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3'
miRNA:   3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 156153 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 159566 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 129853 0.66 0.581962
Target:  5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3'
miRNA:   3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5'
24350 3' -63.8 NC_005264.1 + 144290 0.66 0.581962
Target:  5'- cCGCuCCGAC-UGAcGCCGgCGCGcCCUCa -3'
miRNA:   3'- -GUG-GGCUGuGCU-CGGCgGCGCcGGAG- -5'
24350 3' -63.8 NC_005264.1 + 40539 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 156678 0.66 0.576218
Target:  5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3'
miRNA:   3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 44663 0.66 0.572396
Target:  5'- gCGCCaaguuCgACGAGCCGCCagacauggGCGGCCa- -3'
miRNA:   3'- -GUGGgcu--G-UGCUCGGCGG--------CGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 42274 0.66 0.572396
Target:  5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3'
miRNA:   3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 161301 0.66 0.572396
Target:  5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3'
miRNA:   3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 74137 0.66 0.572396
Target:  5'- uCAUgCGGCAUGcacgccacgcAGCUGCUuCGGCCUCu -3'
miRNA:   3'- -GUGgGCUGUGC----------UCGGCGGcGCCGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.