Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 98417 | 0.66 | 0.590599 |
Target: 5'- uCGCCUGGCGCuuacggacuaucuGAGCCaGUCGUGGagCUCg -3' miRNA: 3'- -GUGGGCUGUG-------------CUCGG-CGGCGCCg-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 137509 | 0.66 | 0.585798 |
Target: 5'- aACUCGuC-CG-GCCGCCGgauuuuuugcuagguCGGCCUCg -3' miRNA: 3'- gUGGGCuGuGCuCGGCGGC---------------GCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 115972 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGACAgGGacgcugaacGCCagGCCGUGuGCgUCg -3' miRNA: 3'- -GUGGGCUGUgCU---------CGG--CGGCGC-CGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 37126 | 0.66 | 0.581962 |
Target: 5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3' miRNA: 3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 102979 | 0.66 | 0.581962 |
Target: 5'- aGCUCaGCAUGA-CCGUgGCGGCCUg -3' miRNA: 3'- gUGGGcUGUGCUcGGCGgCGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 10827 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3' miRNA: 3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 126964 | 0.66 | 0.581962 |
Target: 5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3' miRNA: 3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 39104 | 0.66 | 0.581962 |
Target: 5'- uGCCCGuGCACGccuacguGuuGCUGCgcuucGGCCUCu -3' miRNA: 3'- gUGGGC-UGUGCu------CggCGGCG-----CCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 100661 | 0.66 | 0.581962 |
Target: 5'- gGCCCGACGgGAGuuGC-GCGaGCUa- -3' miRNA: 3'- gUGGGCUGUgCUCggCGgCGC-CGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 7938 | 0.66 | 0.581962 |
Target: 5'- uGCCgCGAgACGAGCCGgaGgGGCUa- -3' miRNA: 3'- gUGG-GCUgUGCUCGGCggCgCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156153 | 0.66 | 0.581962 |
Target: 5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3' miRNA: 3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 159566 | 0.66 | 0.581962 |
Target: 5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3' miRNA: 3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 129853 | 0.66 | 0.581962 |
Target: 5'- gCGCCCGauggcgauauGCGCGAGC--CCGCGuGUCUCc -3' miRNA: 3'- -GUGGGC----------UGUGCUCGgcGGCGC-CGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 144290 | 0.66 | 0.581962 |
Target: 5'- cCGCuCCGAC-UGAcGCCGgCGCGcCCUCa -3' miRNA: 3'- -GUG-GGCUGuGCU-CGGCgGCGCcGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 40539 | 0.66 | 0.581962 |
Target: 5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3' miRNA: 3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156678 | 0.66 | 0.576218 |
Target: 5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3' miRNA: 3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 44663 | 0.66 | 0.572396 |
Target: 5'- gCGCCaaguuCgACGAGCCGCCagacauggGCGGCCa- -3' miRNA: 3'- -GUGGgcu--G-UGCUCGGCGG--------CGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 42274 | 0.66 | 0.572396 |
Target: 5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3' miRNA: 3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 161301 | 0.66 | 0.572396 |
Target: 5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3' miRNA: 3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 74137 | 0.66 | 0.572396 |
Target: 5'- uCAUgCGGCAUGcacgccacgcAGCUGCUuCGGCCUCu -3' miRNA: 3'- -GUGgGCUGUGC----------UCGGCGGcGCCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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