miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 103940 0.66 0.999926
Target:  5'- -gGAGGCggcauccgcuaugcGCGA---ACGcgUGGCGCu -3'
miRNA:   3'- gaCUCCGa-------------UGCUauaUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 159720 0.66 0.999917
Target:  5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3'
miRNA:   3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5'
24350 5' -47.2 NC_005264.1 + 133307 0.66 0.999917
Target:  5'- gUGAcGCUGCGAgagACGGU-GGCGa -3'
miRNA:   3'- gACUcCGAUGCUauaUGUUAaCCGCg -5'
24350 5' -47.2 NC_005264.1 + 118535 0.66 0.999917
Target:  5'- --aGGGCUaucggGCGAUacuacgcgcaaGUGCAuGUUGGCGUg -3'
miRNA:   3'- gacUCCGA-----UGCUA-----------UAUGU-UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 140025 0.66 0.999917
Target:  5'- gCUGAGGCUguaccacaACGGUcccucugACAgg-GGCGUg -3'
miRNA:   3'- -GACUCCGA--------UGCUAua-----UGUuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 40694 0.66 0.999917
Target:  5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3'
miRNA:   3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5'
24350 5' -47.2 NC_005264.1 + 95601 0.66 0.999891
Target:  5'- -aGcGGCUACcccGUACAauaAUUGGCGUa -3'
miRNA:   3'- gaCuCCGAUGcuaUAUGU---UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 125856 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 6830 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 24483 0.66 0.999858
Target:  5'- gUGAcGUUGCGAUAgucGCGuucgGGCGCc -3'
miRNA:   3'- gACUcCGAUGCUAUa--UGUuaa-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 140671 0.66 0.999858
Target:  5'- -aGGGGCUGuugUGAcGUACGGcccgcGGCGCa -3'
miRNA:   3'- gaCUCCGAU---GCUaUAUGUUaa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 81216 0.66 0.999858
Target:  5'- -cGAGGCaUAUGAgcaucgGCcGUcccUGGCGCa -3'
miRNA:   3'- gaCUCCG-AUGCUaua---UGuUA---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 109606 0.66 0.999816
Target:  5'- -cGGGGC-ACGGaaaGCAAaUGGCGUg -3'
miRNA:   3'- gaCUCCGaUGCUauaUGUUaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 37953 0.66 0.99977
Target:  5'- aUGGGGggGCGGUuagccaguugcgcgGCAcgUGGCGUu -3'
miRNA:   3'- gACUCCgaUGCUAua------------UGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 43611 0.66 0.999764
Target:  5'- -gGGGGCUACGAUuu-CGAggcucggaaGCGCg -3'
miRNA:   3'- gaCUCCGAUGCUAuauGUUaac------CGCG- -5'
24350 5' -47.2 NC_005264.1 + 112996 0.66 0.999764
Target:  5'- -aGaAGGCUGCGGcGUACGugcucGCGCa -3'
miRNA:   3'- gaC-UCCGAUGCUaUAUGUuaac-CGCG- -5'
24350 5' -47.2 NC_005264.1 + 94613 0.66 0.999764
Target:  5'- ---uGGCUugGcgGUGCGGcgUGGaCGCg -3'
miRNA:   3'- gacuCCGAugCuaUAUGUUa-ACC-GCG- -5'
24350 5' -47.2 NC_005264.1 + 93828 0.67 0.999699
Target:  5'- -cGAGGUgGCGGUu--CGGUUGGCcguGCg -3'
miRNA:   3'- gaCUCCGaUGCUAuauGUUAACCG---CG- -5'
24350 5' -47.2 NC_005264.1 + 82627 0.67 0.999699
Target:  5'- -gGAGGg---GAUAUGCGcgUGGCGUu -3'
miRNA:   3'- gaCUCCgaugCUAUAUGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 136434 0.67 0.999699
Target:  5'- uCUGAGGCggaaGA---GCAug-GGCGCu -3'
miRNA:   3'- -GACUCCGaug-CUauaUGUuaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.