miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24351 5' -58.9 NC_005264.1 + 98162 0.66 0.799302
Target:  5'- gGCCuGCCC--GCCGGc-AGGCCCAa- -3'
miRNA:   3'- -UGGuCGGGuuCGGCCcuUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 73659 0.66 0.799302
Target:  5'- cACCuGCC---GCCGGGAcGACCCu-- -3'
miRNA:   3'- -UGGuCGGguuCGGCCCUuCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 159848 0.66 0.78135
Target:  5'- cGCCGGCCC-AGUCGGcGcucgcauGGAUUCGUGg -3'
miRNA:   3'- -UGGUCGGGuUCGGCC-Cu------UCUGGGUAC- -5'
24351 5' -58.9 NC_005264.1 + 148746 0.66 0.761944
Target:  5'- aGCCGGCCCAgcAGCCguauacaugguucGGGAAGuCUggCGUGc -3'
miRNA:   3'- -UGGUCGGGU--UCGG-------------CCCUUCuGG--GUAC- -5'
24351 5' -58.9 NC_005264.1 + 128102 0.67 0.753471
Target:  5'- gACCGGCgC--GCCGGGAAGAacgCCAa- -3'
miRNA:   3'- -UGGUCGgGuuCGGCCCUUCUg--GGUac -5'
24351 5' -58.9 NC_005264.1 + 75107 0.67 0.753471
Target:  5'- cGCCGGCgCCGAGCUGGGGcgcAGuCaaAUGg -3'
miRNA:   3'- -UGGUCG-GGUUCGGCCCU---UCuGggUAC- -5'
24351 5' -58.9 NC_005264.1 + 54174 0.67 0.743959
Target:  5'- aACCGcGCCCuGGCCGGG-AGACgaCAc- -3'
miRNA:   3'- -UGGU-CGGGuUCGGCCCuUCUGg-GUac -5'
24351 5' -58.9 NC_005264.1 + 119545 0.67 0.705049
Target:  5'- uCCguGGCCCAGGCCGaccGAucAGACCCGc- -3'
miRNA:   3'- uGG--UCGGGUUCGGCc--CU--UCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 518 0.67 0.705049
Target:  5'- uCCguGGCCCAGGCCGaccGAucAGACCCGc- -3'
miRNA:   3'- uGG--UCGGGUUCGGCc--CU--UCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 34399 0.68 0.685199
Target:  5'- gGCgCGGCUCGAGCUcaGGGAaugagccgAGACCCGc- -3'
miRNA:   3'- -UG-GUCGGGUUCGG--CCCU--------UCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 123583 0.68 0.682206
Target:  5'- cGCCaAGUcucgggaucacaagCCGAGCCGGGAacgcAGGCCCu-- -3'
miRNA:   3'- -UGG-UCG--------------GGUUCGGCCCU----UCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 4556 0.68 0.682206
Target:  5'- cGCCaAGUcucgggaucacaagCCGAGCCGGGAacgcAGGCCCu-- -3'
miRNA:   3'- -UGG-UCG--------------GGUUCGGCCCU----UCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 17683 0.68 0.675207
Target:  5'- gGCgCAGCCgAGGCCGcGgcGGCUCGUGu -3'
miRNA:   3'- -UG-GUCGGgUUCGGCcCuuCUGGGUAC- -5'
24351 5' -58.9 NC_005264.1 + 68247 0.68 0.655127
Target:  5'- aGCCAuGCCCGcGCCGcGGgcGGCCUg-- -3'
miRNA:   3'- -UGGU-CGGGUuCGGC-CCuuCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 80028 0.68 0.655127
Target:  5'- uCCGGUUgGAGCgGGGGAGACCa--- -3'
miRNA:   3'- uGGUCGGgUUCGgCCCUUCUGGguac -5'
24351 5' -58.9 NC_005264.1 + 26953 0.68 0.645057
Target:  5'- uACUcgaAGUCC--GCCGGG-AGGCCCAUGc -3'
miRNA:   3'- -UGG---UCGGGuuCGGCCCuUCUGGGUAC- -5'
24351 5' -58.9 NC_005264.1 + 41093 0.69 0.634976
Target:  5'- gACgGGCCC-GGCCGcGGgcGGCCUAUc -3'
miRNA:   3'- -UGgUCGGGuUCGGC-CCuuCUGGGUAc -5'
24351 5' -58.9 NC_005264.1 + 160120 0.69 0.634976
Target:  5'- gACgGGCCC-GGCCGcGGgcGGCCUAUc -3'
miRNA:   3'- -UGgUCGGGuUCGGC-CCuuCUGGGUAc -5'
24351 5' -58.9 NC_005264.1 + 115794 0.69 0.634976
Target:  5'- cCCAGCCCAuagacacgugGGaCCGcGGGAGGCCgCGUu -3'
miRNA:   3'- uGGUCGGGU----------UC-GGC-CCUUCUGG-GUAc -5'
24351 5' -58.9 NC_005264.1 + 125032 0.69 0.614816
Target:  5'- gUCGGCCCcgacGGgCGGGGAGGCUCcgGg -3'
miRNA:   3'- uGGUCGGGu---UCgGCCCUUCUGGGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.