miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24352 3' -59.1 NC_005264.1 + 37645 0.66 0.804866
Target:  5'- gACGUGGCGGagaugaaggcuucggUUGCCGGCaUCgGCgCCCc -3'
miRNA:   3'- -UGCAUCGUU---------------GACGGCCG-GGaCGaGGG- -5'
24352 3' -59.1 NC_005264.1 + 61964 0.66 0.801375
Target:  5'- cCGUAGCAuuccccCUcGUCGcGCgCCUGgUCCCa -3'
miRNA:   3'- uGCAUCGUu-----GA-CGGC-CG-GGACgAGGG- -5'
24352 3' -59.1 NC_005264.1 + 148901 0.66 0.782674
Target:  5'- cGCGUGGCAuagacuuGCUGCgGcaGCUUUGcCUCCUg -3'
miRNA:   3'- -UGCAUCGU-------UGACGgC--CGGGAC-GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 51934 0.66 0.77448
Target:  5'- cACGUGGUcaggaAACUGCCauaaCCgUGUUCCCc -3'
miRNA:   3'- -UGCAUCG-----UUGACGGcc--GGgACGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 135687 0.66 0.77448
Target:  5'- gACGgccuGCAcggACggGCCGGCCCUcggGCUcauggCCCa -3'
miRNA:   3'- -UGCau--CGU---UGa-CGGCCGGGA---CGA-----GGG- -5'
24352 3' -59.1 NC_005264.1 + 38471 0.66 0.77448
Target:  5'- -gGUAGCAuGCUGCCGcGCUUUcuCUCCUa -3'
miRNA:   3'- ugCAUCGU-UGACGGC-CGGGAc-GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 66994 0.66 0.764331
Target:  5'- gGCG-AGCAacggcgaguGCUGCCuggacggagcggcGGCCUUGCgcaggCCCc -3'
miRNA:   3'- -UGCaUCGU---------UGACGG-------------CCGGGACGa----GGG- -5'
24352 3' -59.1 NC_005264.1 + 19777 0.67 0.755925
Target:  5'- -aGUAGCucuaUGCCGGUgCcGCUgCCCg -3'
miRNA:   3'- ugCAUCGuug-ACGGCCGgGaCGA-GGG- -5'
24352 3' -59.1 NC_005264.1 + 38384 0.67 0.753103
Target:  5'- gGCGagAGCGGCgacgccgagacagaUGCCGcguacGCCCUGCUggCCCc -3'
miRNA:   3'- -UGCa-UCGUUG--------------ACGGC-----CGGGACGA--GGG- -5'
24352 3' -59.1 NC_005264.1 + 157411 0.67 0.753103
Target:  5'- gGCGagAGCGGCgacgccgagacagaUGCCGcguacGCCCUGCUggCCCc -3'
miRNA:   3'- -UGCa-UCGUUG--------------ACGGC-----CGGGACGA--GGG- -5'
24352 3' -59.1 NC_005264.1 + 12131 0.67 0.746485
Target:  5'- gGCG-GGCAGCcccGCCGagaGCCCUGC-CUCg -3'
miRNA:   3'- -UGCaUCGUUGa--CGGC---CGGGACGaGGG- -5'
24352 3' -59.1 NC_005264.1 + 85431 0.67 0.746485
Target:  5'- cACGUcGUcGCUauccauaugcggGCCGGCCCUGgaaCUCCUu -3'
miRNA:   3'- -UGCAuCGuUGA------------CGGCCGGGAC---GAGGG- -5'
24352 3' -59.1 NC_005264.1 + 131158 0.67 0.746485
Target:  5'- gGCG-GGCAGCcccGCCGagaGCCCUGC-CUCg -3'
miRNA:   3'- -UGCaUCGUUGa--CGGC---CGGGACGaGGG- -5'
24352 3' -59.1 NC_005264.1 + 82639 0.67 0.745536
Target:  5'- cGCGUGGCGuUUGCgUGGCCCcagaaagUGCaUUCCg -3'
miRNA:   3'- -UGCAUCGUuGACG-GCCGGG-------ACG-AGGG- -5'
24352 3' -59.1 NC_005264.1 + 37667 0.67 0.727325
Target:  5'- cGCGaUGcGCGACgggcGCgCGGCCCUcGCccUCCCg -3'
miRNA:   3'- -UGC-AU-CGUUGa---CG-GCCGGGA-CG--AGGG- -5'
24352 3' -59.1 NC_005264.1 + 55835 0.67 0.727325
Target:  5'- gGCGgcGCGGCUGaCUGGgCCUcaggGCUUCUg -3'
miRNA:   3'- -UGCauCGUUGAC-GGCCgGGA----CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 68628 0.67 0.717623
Target:  5'- uCGUAGCAACgcgugguagGCgacgaGGCUCUGCaguuUCCCc -3'
miRNA:   3'- uGCAUCGUUGa--------CGg----CCGGGACG----AGGG- -5'
24352 3' -59.1 NC_005264.1 + 13357 0.67 0.70785
Target:  5'- aACGUcGgGGCcgaGCCggGGCCCgcgGCUCCCc -3'
miRNA:   3'- -UGCAuCgUUGa--CGG--CCGGGa--CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 138172 0.67 0.70785
Target:  5'- -gGUGGCGGCUuCCGGCC-UGC-CUCg -3'
miRNA:   3'- ugCAUCGUUGAcGGCCGGgACGaGGG- -5'
24352 3' -59.1 NC_005264.1 + 132384 0.67 0.70785
Target:  5'- aACGUcGgGGCcgaGCCggGGCCCgcgGCUCCCc -3'
miRNA:   3'- -UGCAuCgUUGa--CGG--CCGGGa--CGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.