miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 5' -50.6 NC_005264.1 + 16444 0.66 0.99648
Target:  5'- gGGCCuGCcCGcGGGUgugaacgugGUCGAACCAg- -3'
miRNA:   3'- -CCGGuCGuGCaUCCA---------UAGUUUGGUgu -5'
24354 5' -50.6 NC_005264.1 + 97213 0.66 0.99648
Target:  5'- cGGUgcGCGCGcGGGUAcccaCGAGCCGCGa -3'
miRNA:   3'- -CCGguCGUGCaUCCAUa---GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 126896 0.66 0.99648
Target:  5'- cGUCGGCGCGaaacAGGUcUCGcGCUACAu -3'
miRNA:   3'- cCGGUCGUGCa---UCCAuAGUuUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 67464 0.66 0.99648
Target:  5'- cGGCCAGCuCGUgaaacccgAGGc--CGGGCCGCc -3'
miRNA:   3'- -CCGGUCGuGCA--------UCCauaGUUUGGUGu -5'
24354 5' -50.6 NC_005264.1 + 49124 0.66 0.996423
Target:  5'- aGGCCaacgcuuggGGCACGUucaAGGUG-CAAGacaugccCCACAg -3'
miRNA:   3'- -CCGG---------UCGUGCA---UCCAUaGUUU-------GGUGU- -5'
24354 5' -50.6 NC_005264.1 + 108437 0.66 0.996423
Target:  5'- --gUAGCGCGUGGGgagAUUAGcggaguuGCCGCAu -3'
miRNA:   3'- ccgGUCGUGCAUCCa--UAGUU-------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 75107 0.66 0.995867
Target:  5'- cGCCGGCGCcgagcUGGGgcgcaGUCAAaugGCCGCGc -3'
miRNA:   3'- cCGGUCGUGc----AUCCa----UAGUU---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97111 0.66 0.995867
Target:  5'- cGGCCAGCGCGaguuGGccucugagcUCAAggGCUACAg -3'
miRNA:   3'- -CCGGUCGUGCau--CCau-------AGUU--UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 94520 0.66 0.995867
Target:  5'- cGUCGGcCACGUGGGagggCAGcggcGCCGCAc -3'
miRNA:   3'- cCGGUC-GUGCAUCCaua-GUU----UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 34810 0.66 0.995867
Target:  5'- uGUCAuGCGCGUcgaguGGUAggaCGGGCCACGa -3'
miRNA:   3'- cCGGU-CGUGCAu----CCAUa--GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 153836 0.66 0.995867
Target:  5'- uGUCAuGCGCGUcgaguGGUAggaCGGGCCACGa -3'
miRNA:   3'- cCGGU-CGUGCAu----CCAUa--GUUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 21196 0.66 0.99546
Target:  5'- uGGCCGGCcguaguagacucaauACGgcGGUGccCcGACCGCGa -3'
miRNA:   3'- -CCGGUCG---------------UGCauCCAUa-GuUUGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 154738 0.66 0.99517
Target:  5'- cGGCCGGUACcUGuGUAUCGcgUCGCGa -3'
miRNA:   3'- -CCGGUCGUGcAUcCAUAGUuuGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 162667 0.66 0.99517
Target:  5'- cGCCGGCGgguCGUAGGUguacgGUCGGcgcGCUGCGc -3'
miRNA:   3'- cCGGUCGU---GCAUCCA-----UAGUU---UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 97745 0.66 0.99517
Target:  5'- aGGCCGGCACGacccGGUGUUcguguuuGACCcucACGg -3'
miRNA:   3'- -CCGGUCGUGCau--CCAUAGu------UUGG---UGU- -5'
24354 5' -50.6 NC_005264.1 + 152147 0.66 0.99517
Target:  5'- aGGCCAGCACGga-GUA-CAucGACUugAa -3'
miRNA:   3'- -CCGGUCGUGCaucCAUaGU--UUGGugU- -5'
24354 5' -50.6 NC_005264.1 + 84179 0.66 0.99517
Target:  5'- cGCCGGCACauaGUGGGa--CGAGgCACAg -3'
miRNA:   3'- cCGGUCGUG---CAUCCauaGUUUgGUGU- -5'
24354 5' -50.6 NC_005264.1 + 123612 0.66 0.99517
Target:  5'- cGGCCGGUAUu--GGUGuUCAAguauccggcaGCCGCAg -3'
miRNA:   3'- -CCGGUCGUGcauCCAU-AGUU----------UGGUGU- -5'
24354 5' -50.6 NC_005264.1 + 128856 0.66 0.995095
Target:  5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3'
miRNA:   3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5'
24354 5' -50.6 NC_005264.1 + 9830 0.66 0.995095
Target:  5'- gGGCCGccGCACGUucgcgagAGG-GUCAAGCgGCc -3'
miRNA:   3'- -CCGGU--CGUGCA-------UCCaUAGUUUGgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.