miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 102510 0.66 0.998086
Target:  5'- gCUCGGGGAAgAC----AACGG-CGCUa -3'
miRNA:   3'- -GAGCCUCUUgUGguauUUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 149585 0.66 0.998086
Target:  5'- -gCGGAGGggggcugcucgAUGCCGagucuuuGCGGUCGCUg -3'
miRNA:   3'- gaGCCUCU-----------UGUGGUauu----UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 85852 0.66 0.998086
Target:  5'- -cCGGAGGgagGC-CCAUAGAUGG-CGUg -3'
miRNA:   3'- gaGCCUCU---UGuGGUAUUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 117255 0.66 0.998086
Target:  5'- -gCGGAGAACgagACC----GCGGUCucguGCCa -3'
miRNA:   3'- gaGCCUCUUG---UGGuauuUGCCAG----CGG- -5'
24355 3' -50.4 NC_005264.1 + 131627 0.66 0.998052
Target:  5'- -gCGGAGAagaacagauggucACGCCucggucuGCGGUgccCGCCg -3'
miRNA:   3'- gaGCCUCU-------------UGUGGuauu---UGCCA---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 60029 0.66 0.998017
Target:  5'- -aCGGAG-GCGCCGcaUGGugGGggaaaagaauugCGCCa -3'
miRNA:   3'- gaGCCUCuUGUGGU--AUUugCCa-----------GCGG- -5'
24355 3' -50.4 NC_005264.1 + 66007 0.66 0.997981
Target:  5'- gUCGuAGAGCGCCAUGuuuggcagggagucGGCGGacuUgGCCa -3'
miRNA:   3'- gAGCcUCUUGUGGUAU--------------UUGCC---AgCGG- -5'
24355 3' -50.4 NC_005264.1 + 148297 0.66 0.997981
Target:  5'- -cUGGAGAccgcgcgcgugcGCGCCGguguucguauggucUGAgguugcgugcGCGGUCGCCc -3'
miRNA:   3'- gaGCCUCU------------UGUGGU--------------AUU----------UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 117508 0.66 0.997719
Target:  5'- uCUCGGGcgcGGCG-CGUcuGCGGUCGCUc -3'
miRNA:   3'- -GAGCCUc--UUGUgGUAuuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 138875 0.66 0.997719
Target:  5'- aUCGGAGAcgACCAUuucguCGG-CGCg -3'
miRNA:   3'- gAGCCUCUugUGGUAuuu--GCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 70938 0.66 0.997719
Target:  5'- aCUCGGucucaaguacguGGAGCugCcUGGGCuGUCGCUc -3'
miRNA:   3'- -GAGCC------------UCUUGugGuAUUUGcCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 46377 0.66 0.997719
Target:  5'- -gCGcAGGACACCgAUAcGCGgGUCGUCa -3'
miRNA:   3'- gaGCcUCUUGUGG-UAUuUGC-CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 14220 0.66 0.997719
Target:  5'- -gCGGAaaacAACGCCAUGAGCuucGGUC-CCa -3'
miRNA:   3'- gaGCCUc---UUGUGGUAUUUG---CCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 87133 0.66 0.997471
Target:  5'- -gCGGGGcGCACCAgucuucgcgccgaaAGACGG-CGCUg -3'
miRNA:   3'- gaGCCUCuUGUGGUa-------------UUUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 156272 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 37245 0.66 0.997294
Target:  5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3'
miRNA:   3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 97422 0.66 0.996806
Target:  5'- uUCGGcaguGAGCGCU----GCGGgCGCCg -3'
miRNA:   3'- gAGCCu---CUUGUGGuauuUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 125480 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 85474 0.66 0.996806
Target:  5'- -aCGGGcGAcGCGCUAgacgGGACGGagaUCGCCa -3'
miRNA:   3'- gaGCCU-CU-UGUGGUa---UUUGCC---AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154113 0.66 0.996806
Target:  5'- -aCGGGGGGCgaGCCG-AAACGG-CgGCCa -3'
miRNA:   3'- gaGCCUCUUG--UGGUaUUUGCCaG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.