Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24355 | 3' | -50.4 | NC_005264.1 | + | 149585 | 0.66 | 0.998086 |
Target: 5'- -gCGGAGGggggcugcucgAUGCCGagucuuuGCGGUCGCUg -3' miRNA: 3'- gaGCCUCU-----------UGUGGUauu----UGCCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 85852 | 0.66 | 0.998086 |
Target: 5'- -cCGGAGGgagGC-CCAUAGAUGG-CGUg -3' miRNA: 3'- gaGCCUCU---UGuGGUAUUUGCCaGCGg -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 102510 | 0.66 | 0.998086 |
Target: 5'- gCUCGGGGAAgAC----AACGG-CGCUa -3' miRNA: 3'- -GAGCCUCUUgUGguauUUGCCaGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 117255 | 0.66 | 0.998086 |
Target: 5'- -gCGGAGAACgagACC----GCGGUCucguGCCa -3' miRNA: 3'- gaGCCUCUUG---UGGuauuUGCCAG----CGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 131627 | 0.66 | 0.998052 |
Target: 5'- -gCGGAGAagaacagauggucACGCCucggucuGCGGUgccCGCCg -3' miRNA: 3'- gaGCCUCU-------------UGUGGuauu---UGCCA---GCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 60029 | 0.66 | 0.998017 |
Target: 5'- -aCGGAG-GCGCCGcaUGGugGGggaaaagaauugCGCCa -3' miRNA: 3'- gaGCCUCuUGUGGU--AUUugCCa-----------GCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 66007 | 0.66 | 0.997981 |
Target: 5'- gUCGuAGAGCGCCAUGuuuggcagggagucGGCGGacuUgGCCa -3' miRNA: 3'- gAGCcUCUUGUGGUAU--------------UUGCC---AgCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 148297 | 0.66 | 0.997981 |
Target: 5'- -cUGGAGAccgcgcgcgugcGCGCCGguguucguauggucUGAgguugcgugcGCGGUCGCCc -3' miRNA: 3'- gaGCCUCU------------UGUGGU--------------AUU----------UGCCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 70938 | 0.66 | 0.997719 |
Target: 5'- aCUCGGucucaaguacguGGAGCugCcUGGGCuGUCGCUc -3' miRNA: 3'- -GAGCC------------UCUUGugGuAUUUGcCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 117508 | 0.66 | 0.997719 |
Target: 5'- uCUCGGGcgcGGCG-CGUcuGCGGUCGCUc -3' miRNA: 3'- -GAGCCUc--UUGUgGUAuuUGCCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 138875 | 0.66 | 0.997719 |
Target: 5'- aUCGGAGAcgACCAUuucguCGG-CGCg -3' miRNA: 3'- gAGCCUCUugUGGUAuuu--GCCaGCGg -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 14220 | 0.66 | 0.997719 |
Target: 5'- -gCGGAaaacAACGCCAUGAGCuucGGUC-CCa -3' miRNA: 3'- gaGCCUc---UUGUGGUAUUUG---CCAGcGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 46377 | 0.66 | 0.997719 |
Target: 5'- -gCGcAGGACACCgAUAcGCGgGUCGUCa -3' miRNA: 3'- gaGCcUCUUGUGG-UAUuUGC-CAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 87133 | 0.66 | 0.997471 |
Target: 5'- -gCGGGGcGCACCAgucuucgcgccgaaAGACGG-CGCUg -3' miRNA: 3'- gaGCCUCuUGUGGUa-------------UUUGCCaGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 156272 | 0.66 | 0.997294 |
Target: 5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3' miRNA: 3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 37245 | 0.66 | 0.997294 |
Target: 5'- cCUgGGGGGcgcauCACCGUGGACGaGgCGCUc -3' miRNA: 3'- -GAgCCUCUu----GUGGUAUUUGC-CaGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 97422 | 0.66 | 0.996806 |
Target: 5'- uUCGGcaguGAGCGCU----GCGGgCGCCg -3' miRNA: 3'- gAGCCu---CUUGUGGuauuUGCCaGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 125480 | 0.66 | 0.996806 |
Target: 5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3' miRNA: 3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 85474 | 0.66 | 0.996806 |
Target: 5'- -aCGGGcGAcGCGCUAgacgGGACGGagaUCGCCa -3' miRNA: 3'- gaGCCU-CU-UGUGGUa---UUUGCC---AGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 154113 | 0.66 | 0.996806 |
Target: 5'- -aCGGGGGGCgaGCCG-AAACGG-CgGCCa -3' miRNA: 3'- gaGCCUCUUG--UGGUaUUUGCCaG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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