miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 3' -56.8 NC_005264.1 + 157141 0.66 0.91033
Target:  5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3'
miRNA:   3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 38114 0.66 0.91033
Target:  5'- uCCGCC--GCCAgGCGUUGCCcGCGc- -3'
miRNA:   3'- -GGCGGguCGGUaCGUAAUGGaCGCcc -5'
24356 3' -56.8 NC_005264.1 + 87623 0.66 0.91033
Target:  5'- gCCGCCgCgcagGGCCgAUGCA--GCCgcGUGGGg -3'
miRNA:   3'- -GGCGG-G----UCGG-UACGUaaUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 137824 0.66 0.91033
Target:  5'- gCGCCUcaggagAGgCAUGCAgcGCCUGagccgcaGGGg -3'
miRNA:   3'- gGCGGG------UCgGUACGUaaUGGACg------CCC- -5'
24356 3' -56.8 NC_005264.1 + 65782 0.66 0.91033
Target:  5'- uCCGCCUcacggAGaCCAUGCGcuuaucgACUUGCGcGGc -3'
miRNA:   3'- -GGCGGG-----UC-GGUACGUaa-----UGGACGC-CC- -5'
24356 3' -56.8 NC_005264.1 + 28753 0.66 0.91033
Target:  5'- gCGCCCAGaCGUGCucUAgCUGCGc- -3'
miRNA:   3'- gGCGGGUCgGUACGuaAUgGACGCcc -5'
24356 3' -56.8 NC_005264.1 + 18491 0.66 0.91033
Target:  5'- uCCGCCCAGUagauUcgGCGaaaacgccUUGCCgauCGGGg -3'
miRNA:   3'- -GGCGGGUCG----GuaCGU--------AAUGGac-GCCC- -5'
24356 3' -56.8 NC_005264.1 + 153942 0.66 0.90854
Target:  5'- cCC-CCCAGCCucuguuucgugucaGUGuCGUaAUCUGUGGGc -3'
miRNA:   3'- -GGcGGGUCGG--------------UAC-GUAaUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 25605 0.66 0.904899
Target:  5'- gCGCCgGGCCG-GCGUUGCggaacacggcggcgGUGGGg -3'
miRNA:   3'- gGCGGgUCGGUaCGUAAUGga------------CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 75408 0.66 0.904284
Target:  5'- uCUGCgCGGCCGcggGCAgugUACg-GCGGGc -3'
miRNA:   3'- -GGCGgGUCGGUa--CGUa--AUGgaCGCCC- -5'
24356 3' -56.8 NC_005264.1 + 77970 0.66 0.904284
Target:  5'- cCUGCCgGcGCCGcGCG-UACCggaGCGGGc -3'
miRNA:   3'- -GGCGGgU-CGGUaCGUaAUGGa--CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 14039 0.66 0.904284
Target:  5'- gUCGUCCGGaCGUgGCGggGCCggGUGGGa -3'
miRNA:   3'- -GGCGGGUCgGUA-CGUaaUGGa-CGCCC- -5'
24356 3' -56.8 NC_005264.1 + 34916 0.66 0.903667
Target:  5'- cCC-CCCAGCCucuguucgugucaGUGuCGUaAUCUGUGGGc -3'
miRNA:   3'- -GGcGGGUCGG-------------UAC-GUAaUGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 58793 0.66 0.903667
Target:  5'- aCCGCCCcccugaGGCCGaaaaaccucuccaUGCAgcuuCUUGCGGc -3'
miRNA:   3'- -GGCGGG------UCGGU-------------ACGUaau-GGACGCCc -5'
24356 3' -56.8 NC_005264.1 + 104937 0.66 0.903047
Target:  5'- aCC-CCCAGCCGUGCcaagcgccgaGCCUcGUGGc -3'
miRNA:   3'- -GGcGGGUCGGUACGuaa-------UGGA-CGCCc -5'
24356 3' -56.8 NC_005264.1 + 160451 0.66 0.898011
Target:  5'- -gGCCgGcGCCggGCu---CCUGCGGGc -3'
miRNA:   3'- ggCGGgU-CGGuaCGuaauGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 115992 0.66 0.898011
Target:  5'- aCGCCaGGCCguGUGCGUcGCCcucUGuCGGGu -3'
miRNA:   3'- gGCGGgUCGG--UACGUAaUGG---AC-GCCC- -5'
24356 3' -56.8 NC_005264.1 + 41424 0.66 0.898011
Target:  5'- -gGCCgGcGCCggGCu---CCUGCGGGc -3'
miRNA:   3'- ggCGGgU-CGGuaCGuaauGGACGCCC- -5'
24356 3' -56.8 NC_005264.1 + 101487 0.66 0.898011
Target:  5'- aCGCUuugaCGGCCAUGCGggAgUUGCacGGGg -3'
miRNA:   3'- gGCGG----GUCGGUACGUaaUgGACG--CCC- -5'
24356 3' -56.8 NC_005264.1 + 85020 0.66 0.891513
Target:  5'- gUCGCa-GGCCAUGU---GCC-GCGGGg -3'
miRNA:   3'- -GGCGggUCGGUACGuaaUGGaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.