miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 3' -60.9 NC_005264.1 + 86601 0.66 0.781082
Target:  5'- -cACGCG-GUCGUCGcGCC-UCGCGa- -3'
miRNA:   3'- cuUGCGCaCGGCAGC-CGGcAGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 71849 0.66 0.778446
Target:  5'- cGACGCGUcGCgG-CGGCgGUguuccgcgacggcaCGCGGGc -3'
miRNA:   3'- cUUGCGCA-CGgCaGCCGgCA--------------GCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 78260 0.66 0.772254
Target:  5'- cAACGCGcuacccuuUGCCGUCGcuCCGacaaGCGGGc -3'
miRNA:   3'- cUUGCGC--------ACGGCAGCc-GGCag--CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 158231 0.66 0.763312
Target:  5'- aGAACGCGccuacGCCGccgCGGCgcUgGCGGGg -3'
miRNA:   3'- -CUUGCGCa----CGGCa--GCCGgcAgCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 125288 0.66 0.763312
Target:  5'- --uCGCG-GUCGUCGccGCCGUCGgGaGGc -3'
miRNA:   3'- cuuGCGCaCGGCAGC--CGGCAGCgC-CC- -5'
24357 3' -60.9 NC_005264.1 + 149669 0.66 0.763312
Target:  5'- cAGCGCGUagGUCGUCGucgucgucGUCGUCGCGa- -3'
miRNA:   3'- cUUGCGCA--CGGCAGC--------CGGCAGCGCcc -5'
24357 3' -60.9 NC_005264.1 + 6261 0.66 0.763312
Target:  5'- --uCGCG-GUCGUCGccGCCGUCGgGaGGc -3'
miRNA:   3'- cuuGCGCaCGGCAGC--CGGCAGCgC-CC- -5'
24357 3' -60.9 NC_005264.1 + 39204 0.66 0.763312
Target:  5'- aGAACGCGccuacGCCGccgCGGCgcUgGCGGGg -3'
miRNA:   3'- -CUUGCGCa----CGGCa--GCCGgcAgCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 75212 0.66 0.754266
Target:  5'- -cACGCG-GCUGcaUCGGCCcugCGCGGcGg -3'
miRNA:   3'- cuUGCGCaCGGC--AGCCGGca-GCGCC-C- -5'
24357 3' -60.9 NC_005264.1 + 20147 0.66 0.745123
Target:  5'- cGAugGCGcGCCGcCGGCgcccaaGaUCGCGGc -3'
miRNA:   3'- -CUugCGCaCGGCaGCCGg-----C-AGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 60846 0.66 0.735892
Target:  5'- ---gGCGUcGgCGUCGGCgCGUgCGCGGc -3'
miRNA:   3'- cuugCGCA-CgGCAGCCG-GCA-GCGCCc -5'
24357 3' -60.9 NC_005264.1 + 34987 0.67 0.71342
Target:  5'- --uCGCGcGCCGgguucuagaccgcCGGCCGcCGCGGa -3'
miRNA:   3'- cuuGCGCaCGGCa------------GCCGGCaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 47205 0.67 0.688675
Target:  5'- uGAGCGgG-GCCa-CGGCCGUCGauGGc -3'
miRNA:   3'- -CUUGCgCaCGGcaGCCGGCAGCgcCC- -5'
24357 3' -60.9 NC_005264.1 + 83134 0.67 0.688675
Target:  5'- --cCGCGgagGCgCGUCuGCCcucauggugucuGUCGCGGGg -3'
miRNA:   3'- cuuGCGCa--CG-GCAGcCGG------------CAGCGCCC- -5'
24357 3' -60.9 NC_005264.1 + 153537 0.67 0.687716
Target:  5'- cGACGCGcaaguaagcaggaUGCgGUUGGgCGUUgGCGGGg -3'
miRNA:   3'- cUUGCGC-------------ACGgCAGCCgGCAG-CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 34510 0.67 0.687716
Target:  5'- cGACGCGcaaguaagcaggaUGCgGUUGGgCGUUgGCGGGg -3'
miRNA:   3'- cUUGCGC-------------ACGgCAGCCgGCAG-CGCCC- -5'
24357 3' -60.9 NC_005264.1 + 106093 0.67 0.679074
Target:  5'- --gUGCGUGCCaaucUCGGCCucCGCGGa -3'
miRNA:   3'- cuuGCGCACGGc---AGCCGGcaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 56415 0.67 0.679074
Target:  5'- cGAGCGCGgcGCCGUCGaGCUucggGUCuuuGCGGu -3'
miRNA:   3'- -CUUGCGCa-CGGCAGC-CGG----CAG---CGCCc -5'
24357 3' -60.9 NC_005264.1 + 120814 0.68 0.659776
Target:  5'- --cCGCGUGCgCGUCGacacuGCCGcCGUGGc -3'
miRNA:   3'- cuuGCGCACG-GCAGC-----CGGCaGCGCCc -5'
24357 3' -60.9 NC_005264.1 + 98081 0.68 0.640398
Target:  5'- cAugGUGUGCCc-CGGCCGcCcCGGGg -3'
miRNA:   3'- cUugCGCACGGcaGCCGGCaGcGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.