miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24359 3' -52 NC_005264.1 + 115894 0.66 0.98469
Target:  5'- --cGGGggGCCAGuGaGCAAcgccaaggagacGAGCGGCg -3'
miRNA:   3'- agaCCCuuCGGUC-CgUGUU------------CUUGUUG- -5'
24359 3' -52 NC_005264.1 + 58364 0.66 0.98469
Target:  5'- cUCUGGcGggGCC-GGCGCGAuauGCGc- -3'
miRNA:   3'- -AGACC-CuuCGGuCCGUGUUcu-UGUug -5'
24359 3' -52 NC_005264.1 + 142093 0.66 0.984505
Target:  5'- gCUGuGGucGCCAGGCAUGaccgguuGGAAUuaGACa -3'
miRNA:   3'- aGAC-CCuuCGGUCCGUGU-------UCUUG--UUG- -5'
24359 3' -52 NC_005264.1 + 138468 0.66 0.984505
Target:  5'- --gGGGGAGCCGcgaagccGGUcauGCcAGAGCGGCg -3'
miRNA:   3'- agaCCCUUCGGU-------CCG---UGuUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 43583 0.66 0.982755
Target:  5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3'
miRNA:   3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 56918 0.66 0.982755
Target:  5'- -aUGGGGcggcguacguGCguGGCGCAcGGGGCGACg -3'
miRNA:   3'- agACCCUu---------CGguCCGUGU-UCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 162610 0.66 0.982755
Target:  5'- gCUGuGgcGCCAGGCAC-GGAaaGCGAUc -3'
miRNA:   3'- aGACcCuuCGGUCCGUGuUCU--UGUUG- -5'
24359 3' -52 NC_005264.1 + 80095 0.66 0.982755
Target:  5'- -gUGGGuuGCUGGGUcuauCGAGGAUGACg -3'
miRNA:   3'- agACCCuuCGGUCCGu---GUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 68192 0.66 0.982755
Target:  5'- gUUUGGGcuuGGUUAGGUACAGGuauauccuCAGCg -3'
miRNA:   3'- -AGACCCu--UCGGUCCGUGUUCuu------GUUG- -5'
24359 3' -52 NC_005264.1 + 88233 0.66 0.982755
Target:  5'- --gGGGAacguggGGUCAGGCGCGGGGuCAu- -3'
miRNA:   3'- agaCCCU------UCGGUCCGUGUUCUuGUug -5'
24359 3' -52 NC_005264.1 + 157380 0.66 0.981509
Target:  5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3'
miRNA:   3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 38353 0.66 0.981509
Target:  5'- gCUGGGcGGCgGGGCGguUaggaccuccuccggcGAGAGCGGCg -3'
miRNA:   3'- aGACCCuUCGgUCCGU--G---------------UUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 3646 0.66 0.980642
Target:  5'- uUCUGGGAGGCgGuuuGaGCugGGG-GCGACu -3'
miRNA:   3'- -AGACCCUUCGgU---C-CGugUUCuUGUUG- -5'
24359 3' -52 NC_005264.1 + 98461 0.66 0.980642
Target:  5'- --cGGGAuuugucaacccGGCCGGcacGCGCGAGGGCAu- -3'
miRNA:   3'- agaCCCU-----------UCGGUC---CGUGUUCUUGUug -5'
24359 3' -52 NC_005264.1 + 121973 0.66 0.980642
Target:  5'- --cGGGAagacGGCgAGGaagaugACGAGGACGACg -3'
miRNA:   3'- agaCCCU----UCGgUCCg-----UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 2947 0.66 0.980642
Target:  5'- --cGGGAagacGGCgAGGaagaugACGAGGACGACg -3'
miRNA:   3'- agaCCCU----UCGgUCCg-----UGUUCUUGUUG- -5'
24359 3' -52 NC_005264.1 + 48338 0.66 0.978341
Target:  5'- cCUGGGGAGUUGGcGCACGccauGGCGGCc -3'
miRNA:   3'- aGACCCUUCGGUC-CGUGUuc--UUGUUG- -5'
24359 3' -52 NC_005264.1 + 56176 0.66 0.978341
Target:  5'- gUCUaGGGggGCUAGGCucucACGGGGuugguCAGa -3'
miRNA:   3'- -AGA-CCCuuCGGUCCG----UGUUCUu----GUUg -5'
24359 3' -52 NC_005264.1 + 30028 0.66 0.978341
Target:  5'- gCUGcGGAGGUUAGGCAaauggGGGAAuCGGCu -3'
miRNA:   3'- aGAC-CCUUCGGUCCGUg----UUCUU-GUUG- -5'
24359 3' -52 NC_005264.1 + 50406 0.66 0.975843
Target:  5'- --aGGGggGUgGauauGGUacGCAAGAGCAACu -3'
miRNA:   3'- agaCCCuuCGgU----CCG--UGUUCUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.