miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 3' -51.4 NC_005264.1 + 33666 0.66 0.992979
Target:  5'- gGUGGCggGUAUGAaucuGGGGCGGAGgCUg -3'
miRNA:   3'- gCGCUGa-UAUGCU----UCUCGCUUCgGAg -5'
24360 3' -51.4 NC_005264.1 + 95986 0.66 0.992979
Target:  5'- gCGCGAuCUAUuuucGCGucGGGCGAcGGCgUCc -3'
miRNA:   3'- -GCGCU-GAUA----UGCuuCUCGCU-UCGgAG- -5'
24360 3' -51.4 NC_005264.1 + 156024 0.66 0.992979
Target:  5'- gGCGACgcuUGCGc--GGUGGAcGCCUCa -3'
miRNA:   3'- gCGCUGau-AUGCuucUCGCUU-CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 109893 0.66 0.992979
Target:  5'- cCGCGGCgcaAUGCGccgcGGGCGcGGCCa- -3'
miRNA:   3'- -GCGCUGa--UAUGCuu--CUCGCuUCGGag -5'
24360 3' -51.4 NC_005264.1 + 55548 0.66 0.992979
Target:  5'- gGCGACggaaGUACuggaggGggGAGCGcGGCC-Ca -3'
miRNA:   3'- gCGCUGa---UAUG------CuuCUCGCuUCGGaG- -5'
24360 3' -51.4 NC_005264.1 + 136575 0.66 0.991925
Target:  5'- gGUGGCgu--CGAAGAGCGGgucguagagagGGCCg- -3'
miRNA:   3'- gCGCUGauauGCUUCUCGCU-----------UCGGag -5'
24360 3' -51.4 NC_005264.1 + 126687 0.66 0.991925
Target:  5'- uGcCGGCU---CGGAGGGCucGGCCUCc -3'
miRNA:   3'- gC-GCUGAuauGCUUCUCGcuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 7660 0.66 0.991925
Target:  5'- uGcCGGCU---CGGAGGGCucGGCCUCc -3'
miRNA:   3'- gC-GCUGAuauGCUUCUCGcuUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 154036 0.66 0.990749
Target:  5'- aGCGGCgcucgaaGAGGAGCGcuGGCCg- -3'
miRNA:   3'- gCGCUGauaug--CUUCUCGCu-UCGGag -5'
24360 3' -51.4 NC_005264.1 + 158248 0.66 0.990749
Target:  5'- cCGCGGCgcugGCGggGAG---GGCCUg -3'
miRNA:   3'- -GCGCUGaua-UGCuuCUCgcuUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 35009 0.66 0.990749
Target:  5'- aGCGGCgcucgaaGAGGAGCGcuGGCCg- -3'
miRNA:   3'- gCGCUGauaug--CUUCUCGCu-UCGGag -5'
24360 3' -51.4 NC_005264.1 + 39221 0.66 0.990749
Target:  5'- cCGCGGCgcugGCGggGAG---GGCCUg -3'
miRNA:   3'- -GCGCUGaua-UGCuuCUCgcuUCGGAg -5'
24360 3' -51.4 NC_005264.1 + 48748 0.66 0.989443
Target:  5'- aGCGGCUcGUAacucagaGAGGAGCGGuacGCCg- -3'
miRNA:   3'- gCGCUGA-UAUg------CUUCUCGCUu--CGGag -5'
24360 3' -51.4 NC_005264.1 + 153571 0.66 0.989443
Target:  5'- gGCGGg-GUACGugagGGaAGCGggGCCUa -3'
miRNA:   3'- gCGCUgaUAUGCu---UC-UCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 156428 0.66 0.989443
Target:  5'- uGCGGCUG-GCGgcG-GUGAucGCCUCg -3'
miRNA:   3'- gCGCUGAUaUGCuuCuCGCUu-CGGAG- -5'
24360 3' -51.4 NC_005264.1 + 34544 0.66 0.989443
Target:  5'- gGCGGg-GUACGugagGGaAGCGggGCCUa -3'
miRNA:   3'- gCGCUgaUAUGCu---UC-UCGCuuCGGAg -5'
24360 3' -51.4 NC_005264.1 + 2908 0.66 0.987997
Target:  5'- gGCGACg--GCG-AGAGCGAcggAGUCg- -3'
miRNA:   3'- gCGCUGauaUGCuUCUCGCU---UCGGag -5'
24360 3' -51.4 NC_005264.1 + 121934 0.66 0.987997
Target:  5'- gGCGACg--GCG-AGAGCGAcggAGUCg- -3'
miRNA:   3'- gCGCUGauaUGCuUCUCGCU---UCGGag -5'
24360 3' -51.4 NC_005264.1 + 52104 0.67 0.986402
Target:  5'- gGCGAaggccGCGAAgcGAGCagGAGGCCUCc -3'
miRNA:   3'- gCGCUgaua-UGCUU--CUCG--CUUCGGAG- -5'
24360 3' -51.4 NC_005264.1 + 125498 0.67 0.984649
Target:  5'- gCGCGGCgaacguCGggGuGCGcGGCCaUCg -3'
miRNA:   3'- -GCGCUGauau--GCuuCuCGCuUCGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.