miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24360 5' -52.6 NC_005264.1 + 132342 0.66 0.98287
Target:  5'- -gAGGACg--GCCGcGCGG-AGCAGg -3'
miRNA:   3'- caUUCUGaagCGGCaCGCCuUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 60000 0.66 0.98287
Target:  5'- -cGAGACg--GCCGcGUGGccGCGGCc -3'
miRNA:   3'- caUUCUGaagCGGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 90922 0.66 0.98287
Target:  5'- cUGAGACgccauuaugUUGCCGgaGuuGAAGCGGCu -3'
miRNA:   3'- cAUUCUGa--------AGCGGCa-CgcCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 52448 0.66 0.98287
Target:  5'- -cGAGcCUgccgaCGCCGUGCGcGuAGCAGa -3'
miRNA:   3'- caUUCuGAa----GCGGCACGC-CuUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 13315 0.66 0.98287
Target:  5'- -gAGGACg--GCCGcGCGG-AGCAGg -3'
miRNA:   3'- caUUCUGaagCGGCaCGCCuUCGUCg -5'
24360 5' -52.6 NC_005264.1 + 145968 0.66 0.98267
Target:  5'- ---cGAcCUUCGCCG-GCGcGAauacgaacugcgcGGCGGCu -3'
miRNA:   3'- cauuCU-GAAGCGGCaCGC-CU-------------UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 37562 0.66 0.980798
Target:  5'- ---cGGCgaCGaCCGcGaCGGAGGCGGCa -3'
miRNA:   3'- cauuCUGaaGC-GGCaC-GCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 96232 0.66 0.980798
Target:  5'- ---cGACggCGCCGgcaacGCGGc-GCAGCc -3'
miRNA:   3'- cauuCUGaaGCGGCa----CGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 73045 0.66 0.980798
Target:  5'- --cGGAaagCGCCG-GCGGuauGCGGCc -3'
miRNA:   3'- cauUCUgaaGCGGCaCGCCuu-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 50446 0.66 0.980798
Target:  5'- --uGGuCUUCGCCGUGCuucuugaaGAAGguGUc -3'
miRNA:   3'- cauUCuGAAGCGGCACGc-------CUUCguCG- -5'
24360 5' -52.6 NC_005264.1 + 156589 0.66 0.980798
Target:  5'- ---cGGCgaCGaCCGcGaCGGAGGCGGCa -3'
miRNA:   3'- cauuCUGaaGC-GGCaC-GCCUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 18128 0.66 0.980798
Target:  5'- -aGAGACgugcUUGCUGUcugGCGcGAGCGGCu -3'
miRNA:   3'- caUUCUGa---AGCGGCA---CGCcUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 10977 0.66 0.980363
Target:  5'- -cGAGACgccccccacgugUCGCCGc-CGGAgcGGCGGCc -3'
miRNA:   3'- caUUCUGa-----------AGCGGCacGCCU--UCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 88577 0.66 0.980363
Target:  5'- aUGAGGCcccgccucuacCGCCGUGUcuGGAGcGCGGCc -3'
miRNA:   3'- cAUUCUGaa---------GCGGCACG--CCUU-CGUCG- -5'
24360 5' -52.6 NC_005264.1 + 24379 0.66 0.97831
Target:  5'- ---cGGCUUCGCgGcucccccgGCGGcgagguagaucgcGAGCAGCg -3'
miRNA:   3'- cauuCUGAAGCGgCa-------CGCC-------------UUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 18581 0.66 0.976103
Target:  5'- -gGAGaACUcggUGUCgGUGCGGuAGCAGCc -3'
miRNA:   3'- caUUC-UGAa--GCGG-CACGCCuUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 79985 0.66 0.976103
Target:  5'- -aGAGACcgaUGCCGgccgcGCGGAAGaggaGGCg -3'
miRNA:   3'- caUUCUGaa-GCGGCa----CGCCUUCg---UCG- -5'
24360 5' -52.6 NC_005264.1 + 116275 0.66 0.973462
Target:  5'- ---cGACUUggaaGCCGUgGCGcGGGCGGCu -3'
miRNA:   3'- cauuCUGAAg---CGGCA-CGCcUUCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 123251 0.66 0.973462
Target:  5'- ----aGCUcCGuCUG-GCGGggGCAGCa -3'
miRNA:   3'- cauucUGAaGC-GGCaCGCCuuCGUCG- -5'
24360 5' -52.6 NC_005264.1 + 116371 0.67 0.970617
Target:  5'- uGUAGGGCc-UGCCGUcGCGGGAGaccucuucguCGGCu -3'
miRNA:   3'- -CAUUCUGaaGCGGCA-CGCCUUC----------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.