Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24361 | 5' | -58.4 | NC_005264.1 | + | 58742 | 0.69 | 0.676766 |
Target: 5'- --aUCCGCGGCCGc---CGCugCGCUa -3' miRNA: 3'- gagAGGCGCUGGCucauGCGugGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 48854 | 0.69 | 0.676766 |
Target: 5'- aUCUCCGCGGUCGuGUcgucgcuucugACGCGCCGg- -3' miRNA: 3'- gAGAGGCGCUGGCuCA-----------UGCGUGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 45329 | 0.68 | 0.715953 |
Target: 5'- -----aGCGACCGcAG-ACGCGCCGCg -3' miRNA: 3'- gagaggCGCUGGC-UCaUGCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 132274 | 0.68 | 0.715953 |
Target: 5'- cCUCUCCuGCGACCccgccGGUagaagugaucGCGaCACCGCg -3' miRNA: 3'- -GAGAGG-CGCUGGc----UCA----------UGC-GUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 113032 | 0.68 | 0.725601 |
Target: 5'- uUUUCCGCGGCCGcg-ACuGgGCCGCg -3' miRNA: 3'- gAGAGGCGCUGGCucaUG-CgUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 81391 | 0.68 | 0.725601 |
Target: 5'- -aCUgCCGaGAUgcaugCGGGUGCGCGCCGCUu -3' miRNA: 3'- gaGA-GGCgCUG-----GCUCAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 87517 | 0.68 | 0.725601 |
Target: 5'- -gCUCCGCGAUCGAugagcCGC-CCGCg -3' miRNA: 3'- gaGAGGCGCUGGCUcau--GCGuGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 104800 | 0.68 | 0.735173 |
Target: 5'- cCUCuUUCGCGAgaCGAGcGgGCGCCGCa -3' miRNA: 3'- -GAG-AGGCGCUg-GCUCaUgCGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 149418 | 0.68 | 0.74466 |
Target: 5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3' miRNA: 3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 30391 | 0.68 | 0.74466 |
Target: 5'- gUCUCgGCGGCgGcGGUcGCGCGCCGgUg -3' miRNA: 3'- gAGAGgCGCUGgC-UCA-UGCGUGGCgA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 128564 | 0.68 | 0.74466 |
Target: 5'- aUUUCCGCGGCgGAGcgcagcACGCggauuACCGCg -3' miRNA: 3'- gAGAGGCGCUGgCUCa-----UGCG-----UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 110859 | 0.68 | 0.74466 |
Target: 5'- cCUCUCgGCGAagaUCGAGcgugaGCGCGCCGaCa -3' miRNA: 3'- -GAGAGgCGCU---GGCUCa----UGCGUGGC-Ga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 16103 | 0.67 | 0.763345 |
Target: 5'- -aCUgCGCGGCCGGGUucuuucUGCcCCGCUc -3' miRNA: 3'- gaGAgGCGCUGGCUCAu-----GCGuGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 124030 | 0.67 | 0.763345 |
Target: 5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3' miRNA: 3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 5003 | 0.67 | 0.763345 |
Target: 5'- uCUCgUCCGCGccggggucgccGCgGAGUACGuCACCGg- -3' miRNA: 3'- -GAG-AGGCGC-----------UGgCUCAUGC-GUGGCga -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 79331 | 0.67 | 0.763345 |
Target: 5'- --aUuuGCGugCGuagcGUGCGCGCUGCUc -3' miRNA: 3'- gagAggCGCugGCu---CAUGCGUGGCGA- -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 44555 | 0.67 | 0.781588 |
Target: 5'- uUCUUgGUGGUCGGGUugGCgACCGCc -3' miRNA: 3'- gAGAGgCGCUGGCUCAugCG-UGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 143280 | 0.67 | 0.781588 |
Target: 5'- cCUCUuuGauACCGAGgaagaGCACCGCc -3' miRNA: 3'- -GAGAggCgcUGGCUCaug--CGUGGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 20838 | 0.67 | 0.781588 |
Target: 5'- aUCUgCCGCGGCauaCGAcgGCGCugCGCg -3' miRNA: 3'- gAGA-GGCGCUG---GCUcaUGCGugGCGa -5' |
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24361 | 5' | -58.4 | NC_005264.1 | + | 101401 | 0.67 | 0.781588 |
Target: 5'- -aCUCgGCG-CCGAGgaGCGgGCCGCc -3' miRNA: 3'- gaGAGgCGCuGGCUCa-UGCgUGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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