miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24362 3' -54.8 NC_005264.1 + 160122 0.66 0.956222
Target:  5'- cGCCUGGGggcagugcuGCAUUGCcAUCUGgcUGCAa- -3'
miRNA:   3'- -CGGACCC---------CGUAGCGuUAGAU--GCGUcc -5'
24362 3' -54.8 NC_005264.1 + 143467 0.66 0.955839
Target:  5'- uGCCcgUGGGGCAUugggUGCGacuuggaccaaacGUCUGCcuCAGGg -3'
miRNA:   3'- -CGG--ACCCCGUA----GCGU-------------UAGAUGc-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 158514 0.66 0.952292
Target:  5'- cGCCaGGGGCAggccugCGCugugGUggACGcCAGGg -3'
miRNA:   3'- -CGGaCCCCGUa-----GCGu---UAgaUGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 117001 0.66 0.952292
Target:  5'- uCUUGGGG----GCGGUCUGCGCGGc -3'
miRNA:   3'- cGGACCCCguagCGUUAGAUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 79700 0.66 0.952292
Target:  5'- -----cGGCGUCGCuaGAUCUaACGCAGGc -3'
miRNA:   3'- cggaccCCGUAGCG--UUAGA-UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 39487 0.66 0.952292
Target:  5'- cGCCaGGGGCAggccugCGCugugGUggACGcCAGGg -3'
miRNA:   3'- -CGGaCCCCGUa-----GCGu---UAgaUGC-GUCC- -5'
24362 3' -54.8 NC_005264.1 + 16492 0.66 0.952292
Target:  5'- gGCCUgcGGGGuCGagGCAcgCcgGCGCAGa -3'
miRNA:   3'- -CGGA--CCCC-GUagCGUuaGa-UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 13599 0.66 0.948133
Target:  5'- -aCgGGaccGGCgAUCGCGGUCgggACGCGGGc -3'
miRNA:   3'- cgGaCC---CCG-UAGCGUUAGa--UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 132626 0.66 0.948133
Target:  5'- -aCgGGaccGGCgAUCGCGGUCgggACGCGGGc -3'
miRNA:   3'- cgGaCC---CCG-UAGCGUUAGa--UGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 48063 0.66 0.948133
Target:  5'- gGCCaGGGaCAUCGgcCGAgcgGCGCAGGg -3'
miRNA:   3'- -CGGaCCCcGUAGC--GUUagaUGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 137431 0.66 0.94374
Target:  5'- cGCCUGGcGCA-CGagauagCUGCGCAGa -3'
miRNA:   3'- -CGGACCcCGUaGCguua--GAUGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 128930 0.66 0.94374
Target:  5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3'
miRNA:   3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 66261 0.66 0.94374
Target:  5'- uGCCa-GGGCcagAUCGCGcUCUGCGUcGGa -3'
miRNA:   3'- -CGGacCCCG---UAGCGUuAGAUGCGuCC- -5'
24362 3' -54.8 NC_005264.1 + 24919 0.66 0.94374
Target:  5'- -gCUGGGGUGaCGCGAUCUuauCGCccGGc -3'
miRNA:   3'- cgGACCCCGUaGCGUUAGAu--GCGu-CC- -5'
24362 3' -54.8 NC_005264.1 + 9904 0.66 0.94374
Target:  5'- cCCUGGcGGCAgaaaggcggCGCuAUCUcGCGCuAGGu -3'
miRNA:   3'- cGGACC-CCGUa--------GCGuUAGA-UGCG-UCC- -5'
24362 3' -54.8 NC_005264.1 + 67778 0.66 0.94374
Target:  5'- gGCUUGGGGUcgagaAagGCAGUCaguaucGCGCAGa -3'
miRNA:   3'- -CGGACCCCG-----UagCGUUAGa-----UGCGUCc -5'
24362 3' -54.8 NC_005264.1 + 137852 0.66 0.934244
Target:  5'- aGCCgcagGGGGUAcggggacaacCGCAgGUCU-CGCGGGa -3'
miRNA:   3'- -CGGa---CCCCGUa---------GCGU-UAGAuGCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 133746 0.67 0.929139
Target:  5'- gGCgCUGGGaGCcuauaCGCAgacAUCUACGCcgAGGa -3'
miRNA:   3'- -CG-GACCC-CGua---GCGU---UAGAUGCG--UCC- -5'
24362 3' -54.8 NC_005264.1 + 100077 0.67 0.929139
Target:  5'- gGCCUaGGGCGUaGCAuggCggcCGCGGGg -3'
miRNA:   3'- -CGGAcCCCGUAgCGUua-Gau-GCGUCC- -5'
24362 3' -54.8 NC_005264.1 + 79210 0.67 0.929139
Target:  5'- cCCUGGGGCuaggcugcgUGCAGgcgGCgGCGGGg -3'
miRNA:   3'- cGGACCCCGua-------GCGUUagaUG-CGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.