miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 3' -63.9 NC_005264.1 + 108468 0.66 0.577139
Target:  5'- gCGCGGgGauCCGGUgGCCGCGCgacgcuucUAAGGc- -3'
miRNA:   3'- -GCGCCgC--GGCCG-CGGCGCG--------AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 82216 0.66 0.577139
Target:  5'- aGCGGCGCCaGCaUCGCGUaGAGuGUc -3'
miRNA:   3'- gCGCCGCGGcCGcGGCGCGaUUC-CAa -5'
24363 3' -63.9 NC_005264.1 + 109893 0.66 0.577139
Target:  5'- cCGCGGCGCaauGCGCCGCGggcgcGGc- -3'
miRNA:   3'- -GCGCCGCGgc-CGCGGCGCgauu-CCaa -5'
24363 3' -63.9 NC_005264.1 + 136337 0.66 0.577139
Target:  5'- cCGCGGCGUagaagcugguuCGGCGCCGCaC--GGGc- -3'
miRNA:   3'- -GCGCCGCG-----------GCCGCGGCGcGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 125862 0.66 0.567508
Target:  5'- gGCGGCGacuaUGGCGCCaGCGCg------ -3'
miRNA:   3'- gCGCCGCg---GCCGCGG-CGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 6836 0.66 0.567508
Target:  5'- gGCGGCGacuaUGGCGCCaGCGCg------ -3'
miRNA:   3'- gCGCCGCg---GCCGCGG-CGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 129499 0.66 0.567508
Target:  5'- gGCGGCGCagGGUuugGCgGCGCcgGAGGc- -3'
miRNA:   3'- gCGCCGCGg-CCG---CGgCGCGa-UUCCaa -5'
24363 3' -63.9 NC_005264.1 + 82366 0.66 0.566547
Target:  5'- gGCaGGCGCgucgaucCGGUGCCGgGCgcAGGg- -3'
miRNA:   3'- gCG-CCGCG-------GCCGCGGCgCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 162441 0.66 0.561748
Target:  5'- aCGCGaacagguacacgaccGCGCCGGCGCUGCcCcccaaagaccaaUAAGGUc -3'
miRNA:   3'- -GCGC---------------CGCGGCCGCGGCGcG------------AUUCCAa -5'
24363 3' -63.9 NC_005264.1 + 160446 0.66 0.557917
Target:  5'- --aGGCagGCCGGCGCCGgGCUccugcGGGc- -3'
miRNA:   3'- gcgCCG--CGGCCGCGGCgCGAu----UCCaa -5'
24363 3' -63.9 NC_005264.1 + 120075 0.66 0.557917
Target:  5'- gGCGGaCGCCGGCuagcgggaGUCGUGCccaccGGGUg -3'
miRNA:   3'- gCGCC-GCGGCCG--------CGGCGCGau---UCCAa -5'
24363 3' -63.9 NC_005264.1 + 41419 0.66 0.557917
Target:  5'- --aGGCagGCCGGCGCCGgGCUccugcGGGc- -3'
miRNA:   3'- gcgCCG--CGGCCGCGGCgCGAu----UCCaa -5'
24363 3' -63.9 NC_005264.1 + 21566 0.66 0.557917
Target:  5'- cCGaGGaCGCCGGCGCCGagacCGUggaaAGGGUg -3'
miRNA:   3'- -GCgCC-GCGGCCGCGGC----GCGa---UUCCAa -5'
24363 3' -63.9 NC_005264.1 + 33943 0.66 0.557917
Target:  5'- cCGUGGCgcGCCGG-GaCCGCGCccgaUAGGGg- -3'
miRNA:   3'- -GCGCCG--CGGCCgC-GGCGCG----AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 56922 0.66 0.557917
Target:  5'- gGCGGCGUaCGuGCGUgGCGCacGGGg- -3'
miRNA:   3'- gCGCCGCG-GC-CGCGgCGCGauUCCaa -5'
24363 3' -63.9 NC_005264.1 + 131577 0.66 0.557917
Target:  5'- gCGCGGCaCCuGGCGCCuagGUGUgGAGGg- -3'
miRNA:   3'- -GCGCCGcGG-CCGCGG---CGCGaUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 152970 0.66 0.557917
Target:  5'- cCGUGGCgcGCCGG-GaCCGCGCccgaUAGGGg- -3'
miRNA:   3'- -GCGCCG--CGGCCgC-GGCGCG----AUUCCaa -5'
24363 3' -63.9 NC_005264.1 + 96231 0.66 0.548373
Target:  5'- gCGaCGGCGCCGGCaacGCgGCGCa------ -3'
miRNA:   3'- -GC-GCCGCGGCCG---CGgCGCGauuccaa -5'
24363 3' -63.9 NC_005264.1 + 21989 0.66 0.548373
Target:  5'- gGCcuGGCGCaagcgaaaGGCGCgGCGCguAGGUUu -3'
miRNA:   3'- gCG--CCGCGg-------CCGCGgCGCGauUCCAA- -5'
24363 3' -63.9 NC_005264.1 + 20261 0.66 0.548373
Target:  5'- uGCGGCG-CGGCcUCGCGgaGGGGa- -3'
miRNA:   3'- gCGCCGCgGCCGcGGCGCgaUUCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.