miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24363 5' -47.5 NC_005264.1 + 18043 0.66 0.99967
Target:  5'- --uGCCgacgCGaAGCGGCGGCgccgcgAGCc -3'
miRNA:   3'- aauUGGaa--GUaUCGUCGCCGaaa---UCG- -5'
24363 5' -47.5 NC_005264.1 + 107958 0.66 0.99967
Target:  5'- gUGAUCUUCcgcuucAGCuugucuagAGCGGCUUUgAGCa -3'
miRNA:   3'- aAUUGGAAGua----UCG--------UCGCCGAAA-UCG- -5'
24363 5' -47.5 NC_005264.1 + 135926 0.66 0.99967
Target:  5'- gUUAACgUUCGauUGGCacaGGCGGCcgggGGCg -3'
miRNA:   3'- -AAUUGgAAGU--AUCG---UCGCCGaaa-UCG- -5'
24363 5' -47.5 NC_005264.1 + 39085 0.66 0.999582
Target:  5'- --cGCCggcUCGgcgGGCAGCGGCgucUGGa -3'
miRNA:   3'- aauUGGa--AGUa--UCGUCGCCGaa-AUCg -5'
24363 5' -47.5 NC_005264.1 + 74279 0.66 0.999582
Target:  5'- -gGGCC-UCAuauggcagcauUAGCGGCGGUc-UGGCg -3'
miRNA:   3'- aaUUGGaAGU-----------AUCGUCGCCGaaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 158112 0.66 0.999582
Target:  5'- --cGCCggcUCGgcgGGCAGCGGCgucUGGa -3'
miRNA:   3'- aauUGGa--AGUa--UCGUCGCCGaa-AUCg -5'
24363 5' -47.5 NC_005264.1 + 4424 0.66 0.999582
Target:  5'- -gAACCUcccUCAuUAGUgacgGGCGGCg--GGCa -3'
miRNA:   3'- aaUUGGA---AGU-AUCG----UCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 67706 0.66 0.999582
Target:  5'- cUGACCgUUCugaacgcuUGGUggGGCGGCUUcggGGCa -3'
miRNA:   3'- aAUUGG-AAGu-------AUCG--UCGCCGAAa--UCG- -5'
24363 5' -47.5 NC_005264.1 + 810 0.66 0.999582
Target:  5'- -cGGCUgg-GUGcGCGGcCGGCUUUAGCc -3'
miRNA:   3'- aaUUGGaagUAU-CGUC-GCCGAAAUCG- -5'
24363 5' -47.5 NC_005264.1 + 157245 0.66 0.999582
Target:  5'- ---gUCUUCGUGGCGGCccucGGCgcgUUGGa -3'
miRNA:   3'- aauuGGAAGUAUCGUCG----CCGa--AAUCg -5'
24363 5' -47.5 NC_005264.1 + 9892 0.66 0.999473
Target:  5'- -cGGCCUUCccAGCccuGGCGGCagaaaGGCg -3'
miRNA:   3'- aaUUGGAAGuaUCG---UCGCCGaaa--UCG- -5'
24363 5' -47.5 NC_005264.1 + 71618 0.66 0.999473
Target:  5'- --cACCggCGaGGCGGCGGCagagaUAGCc -3'
miRNA:   3'- aauUGGaaGUaUCGUCGCCGaa---AUCG- -5'
24363 5' -47.5 NC_005264.1 + 25610 0.66 0.999473
Target:  5'- -gGGCCggCGUugcggaacacGGCGGCGGUgg-GGCc -3'
miRNA:   3'- aaUUGGaaGUA----------UCGUCGCCGaaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 136910 0.66 0.999473
Target:  5'- -gAGCCgcgUCGUGcaguGCAGCcGCUUcgUGGCg -3'
miRNA:   3'- aaUUGGa--AGUAU----CGUCGcCGAA--AUCG- -5'
24363 5' -47.5 NC_005264.1 + 77454 0.66 0.999473
Target:  5'- -gAACCg-CGUGGUcgcgguacacAGCGGCUcgGGCu -3'
miRNA:   3'- aaUUGGaaGUAUCG----------UCGCCGAaaUCG- -5'
24363 5' -47.5 NC_005264.1 + 128918 0.66 0.999473
Target:  5'- -cGGCCUUCccAGCccuGGCGGCagaaaGGCg -3'
miRNA:   3'- aaUUGGAAGuaUCG---UCGCCGaaa--UCG- -5'
24363 5' -47.5 NC_005264.1 + 132902 0.66 0.999341
Target:  5'- gUUGACCggCuaggcGCAGCGGCguaccucccUAGCg -3'
miRNA:   3'- -AAUUGGaaGuau--CGUCGCCGaa-------AUCG- -5'
24363 5' -47.5 NC_005264.1 + 67013 0.66 0.999341
Target:  5'- --uGCCUggaCGgAGCGGCGGCcUUGcGCa -3'
miRNA:   3'- aauUGGAa--GUaUCGUCGCCGaAAU-CG- -5'
24363 5' -47.5 NC_005264.1 + 26947 0.66 0.999341
Target:  5'- gUAGCgCgugcgCAUcGCAGUGGCU-UGGCg -3'
miRNA:   3'- aAUUG-Gaa---GUAuCGUCGCCGAaAUCG- -5'
24363 5' -47.5 NC_005264.1 + 153599 0.66 0.999296
Target:  5'- -gAugCUUCAguacgaaacgcgcgUGGUAGCGGCgUUUcGCa -3'
miRNA:   3'- aaUugGAAGU--------------AUCGUCGCCG-AAAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.