miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24364 5' -59.6 NC_005264.1 + 93496 0.66 0.8119
Target:  5'- uGCUgGCGGcCGgcgCGUCGUUC-CCUUCg -3'
miRNA:   3'- gUGG-CGCCaGCa--GCAGCGAGuGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 106236 0.66 0.8119
Target:  5'- uUACUcgaGCGGUCG-CGaggCGCUCGCgCCUg -3'
miRNA:   3'- -GUGG---CGCCAGCaGCa--GCGAGUG-GGAg -5'
24364 5' -59.6 NC_005264.1 + 53202 0.66 0.8119
Target:  5'- gGCCGCGaGUUGcaacCGUCGCgcccccCGCCCa- -3'
miRNA:   3'- gUGGCGC-CAGCa---GCAGCGa-----GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 27682 0.66 0.8119
Target:  5'- --aCGCGGcuggccucugccUCGcCGaCGCUCGCUCUCa -3'
miRNA:   3'- gugGCGCC------------AGCaGCaGCGAGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 132221 0.66 0.803395
Target:  5'- uGCgCGCGGaucCGUCGcCGC-CGCCgUCg -3'
miRNA:   3'- gUG-GCGCCa--GCAGCaGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 83132 0.66 0.803395
Target:  5'- gGCCGCGGagG-CG-CGUcUGCCCUCa -3'
miRNA:   3'- gUGGCGCCagCaGCaGCGaGUGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 13194 0.66 0.803395
Target:  5'- uGCgCGCGGaucCGUCGcCGC-CGCCgUCg -3'
miRNA:   3'- gUG-GCGCCa--GCAGCaGCGaGUGGgAG- -5'
24364 5' -59.6 NC_005264.1 + 122894 0.66 0.794746
Target:  5'- aGCCGaGGUCGcCGUgGCccCACCCg- -3'
miRNA:   3'- gUGGCgCCAGCaGCAgCGa-GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 3868 0.66 0.794746
Target:  5'- aGCCGaGGUCGcCGUgGCccCACCCg- -3'
miRNA:   3'- gUGGCgCCAGCaGCAgCGa-GUGGGag -5'
24364 5' -59.6 NC_005264.1 + 4806 0.66 0.78596
Target:  5'- aCGCCcUGGUccaucCGUCGUCGCUCugCa-- -3'
miRNA:   3'- -GUGGcGCCA-----GCAGCAGCGAGugGgag -5'
24364 5' -59.6 NC_005264.1 + 51421 0.66 0.78596
Target:  5'- aCGCCGgGGagcCGcCGUCGC-C-CCCUCc -3'
miRNA:   3'- -GUGGCgCCa--GCaGCAGCGaGuGGGAG- -5'
24364 5' -59.6 NC_005264.1 + 96106 0.66 0.78596
Target:  5'- uGCCGCGGUuuaggcgccggCGcUUGUUGCUC-CCCg- -3'
miRNA:   3'- gUGGCGCCA-----------GC-AGCAGCGAGuGGGag -5'
24364 5' -59.6 NC_005264.1 + 117794 0.66 0.78596
Target:  5'- aCugCGCGGcauccUCGUCGcCGUcCAUCCUg -3'
miRNA:   3'- -GugGCGCC-----AGCAGCaGCGaGUGGGAg -5'
24364 5' -59.6 NC_005264.1 + 123832 0.66 0.78596
Target:  5'- aCGCCcUGGUccaucCGUCGUCGCUCugCa-- -3'
miRNA:   3'- -GUGGcGCCA-----GCAGCAGCGAGugGgag -5'
24364 5' -59.6 NC_005264.1 + 52776 0.66 0.785074
Target:  5'- --aCGCGGUCGUgguacucgcguacUGUCGCUUGCCg-- -3'
miRNA:   3'- gugGCGCCAGCA-------------GCAGCGAGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 133691 0.66 0.784187
Target:  5'- uCGCCGCGGUCcUUGcCGCcgcgcacuggugCugCCUCu -3'
miRNA:   3'- -GUGGCGCCAGcAGCaGCGa-----------GugGGAG- -5'
24364 5' -59.6 NC_005264.1 + 45589 0.66 0.777045
Target:  5'- gACCGCGGUC-UCGUucucCGCaUCGCCg-- -3'
miRNA:   3'- gUGGCGCCAGcAGCA----GCG-AGUGGgag -5'
24364 5' -59.6 NC_005264.1 + 117266 0.66 0.76801
Target:  5'- gACCGCGGUC-UCGU-GC-CACCUa- -3'
miRNA:   3'- gUGGCGCCAGcAGCAgCGaGUGGGag -5'
24364 5' -59.6 NC_005264.1 + 51954 0.66 0.7671
Target:  5'- uGCCGCuaacgCGUCGUgucggcgCGCUCACgCUCg -3'
miRNA:   3'- gUGGCGcca--GCAGCA-------GCGAGUGgGAG- -5'
24364 5' -59.6 NC_005264.1 + 11658 0.67 0.749611
Target:  5'- gGCUGCuGUCGUCGUCGCgcaauUCgACCgUUa -3'
miRNA:   3'- gUGGCGcCAGCAGCAGCG-----AG-UGGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.