miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24366 5' -55.3 NC_005264.1 + 155447 0.66 0.954512
Target:  5'- aCGACGGCG-CCgggGCCGCGAucGAAGa- -3'
miRNA:   3'- -GCUGUCGUaGGga-UGGCGCU--CUUCcc -5'
24366 5' -55.3 NC_005264.1 + 110151 0.66 0.954512
Target:  5'- gGGCGGCGaaaCCC-GCCGCGGcuuuGGGGc -3'
miRNA:   3'- gCUGUCGUa--GGGaUGGCGCUcu--UCCC- -5'
24366 5' -55.3 NC_005264.1 + 127827 0.66 0.950528
Target:  5'- cCGACAGCGUUgCCU-CCGCGGcGGccGGc -3'
miRNA:   3'- -GCUGUCGUAG-GGAuGGCGCU-CUucCC- -5'
24366 5' -55.3 NC_005264.1 + 121793 0.66 0.950528
Target:  5'- gGACGGCG-CCCaauaCGUuAGGAGGGg -3'
miRNA:   3'- gCUGUCGUaGGGaug-GCGcUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 25196 0.66 0.946318
Target:  5'- uGAgGGCcgCCCUGuguCUGuCGAGcGGGGa -3'
miRNA:   3'- gCUgUCGuaGGGAU---GGC-GCUCuUCCC- -5'
24366 5' -55.3 NC_005264.1 + 73079 0.66 0.946318
Target:  5'- cCGcGCGGCAUCUCUACUuCGAcGGGuGGGa -3'
miRNA:   3'- -GC-UGUCGUAGGGAUGGcGCU-CUU-CCC- -5'
24366 5' -55.3 NC_005264.1 + 121782 0.66 0.946318
Target:  5'- aCGGC-GCGUCCCccggcgccgUACCGUcuGGGGAGuGGu -3'
miRNA:   3'- -GCUGuCGUAGGG---------AUGGCG--CUCUUC-CC- -5'
24366 5' -55.3 NC_005264.1 + 2756 0.66 0.946318
Target:  5'- aCGGC-GCGUCCCccggcgccgUACCGUcuGGGGAGuGGu -3'
miRNA:   3'- -GCUGuCGUAGGG---------AUGGCG--CUCUUC-CC- -5'
24366 5' -55.3 NC_005264.1 + 160509 0.66 0.941878
Target:  5'- cCGAaaaAGUAcauUCCUUacgcGCCGCuGGGggGGGa -3'
miRNA:   3'- -GCUg--UCGU---AGGGA----UGGCG-CUCuuCCC- -5'
24366 5' -55.3 NC_005264.1 + 147148 0.66 0.936727
Target:  5'- uCGACGGCGUUCUg--UGCGAGGAgcauuuuGGGg -3'
miRNA:   3'- -GCUGUCGUAGGGaugGCGCUCUU-------CCC- -5'
24366 5' -55.3 NC_005264.1 + 159178 0.66 0.932303
Target:  5'- aGACGGCcgCCC-AUCGuCGAGAcGGcGg -3'
miRNA:   3'- gCUGUCGuaGGGaUGGC-GCUCUuCC-C- -5'
24366 5' -55.3 NC_005264.1 + 39671 0.66 0.932303
Target:  5'- gCGGCaAGCAUCgCgacaagcgGCCGUGuuuggcAGAGGGGa -3'
miRNA:   3'- -GCUG-UCGUAGgGa-------UGGCGC------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 40151 0.66 0.932303
Target:  5'- aGACGGCcgCCC-AUCGuCGAGAcGGcGg -3'
miRNA:   3'- gCUGUCGuaGGGaUGGC-GCUCUuCC-C- -5'
24366 5' -55.3 NC_005264.1 + 92130 0.66 0.932303
Target:  5'- -cGCAGCGUUCggcgACCGaguGGGAGGGGa -3'
miRNA:   3'- gcUGUCGUAGGga--UGGCg--CUCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 158697 0.66 0.932303
Target:  5'- gCGGCaAGCAUCgCgacaagcgGCCGUGuuuggcAGAGGGGa -3'
miRNA:   3'- -GCUG-UCGUAGgGa-------UGGCGC------UCUUCCC- -5'
24366 5' -55.3 NC_005264.1 + 21219 0.67 0.927165
Target:  5'- aCGGCGGUGcCCCgACCGCGAuuuggacgucauGAGGGc -3'
miRNA:   3'- -GCUGUCGUaGGGaUGGCGCU------------CUUCCc -5'
24366 5' -55.3 NC_005264.1 + 135227 0.67 0.921792
Target:  5'- aGAUGGCGUCCUgugacgACCGUGaAGAuGGa -3'
miRNA:   3'- gCUGUCGUAGGGa-----UGGCGC-UCUuCCc -5'
24366 5' -55.3 NC_005264.1 + 3675 0.67 0.910346
Target:  5'- gGGCGGcCGUCUCgGCgGCGAGAcgAGGa -3'
miRNA:   3'- gCUGUC-GUAGGGaUGgCGCUCU--UCCc -5'
24366 5' -55.3 NC_005264.1 + 122702 0.67 0.910346
Target:  5'- gGGCGGcCGUCUCgGCgGCGAGAcgAGGa -3'
miRNA:   3'- gCUGUC-GUAGGGaUGgCGCUCU--UCCc -5'
24366 5' -55.3 NC_005264.1 + 154574 0.67 0.904275
Target:  5'- uGuuGGCGUUCCUgaaccaacacGCCaGCGAaGAGGGGg -3'
miRNA:   3'- gCugUCGUAGGGA----------UGG-CGCU-CUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.