miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24369 3' -59 NC_005264.1 + 70142 0.66 0.823387
Target:  5'- aACGUGCuuGCUgcCGCgGCGGCGCCUCa- -3'
miRNA:   3'- -UGUAUGucUGA--GUG-CGCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 67019 0.66 0.823387
Target:  5'- gACGgagcgGCGGcCUUGCGCaG-GCCCCCGa -3'
miRNA:   3'- -UGUa----UGUCuGAGUGCGcCgCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 44828 0.66 0.823387
Target:  5'- ---aGguGGCUCAUGgGcauaGUGCCCCCGa -3'
miRNA:   3'- uguaUguCUGAGUGCgC----CGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 25880 0.66 0.815006
Target:  5'- gAC-UGCAGACUCcgcacagugggGCGCuGCGCCUUCu -3'
miRNA:   3'- -UGuAUGUCUGAG-----------UGCGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 110308 0.66 0.815006
Target:  5'- -gAUGCAGuACUCugccACGCGGCGCacgaaaUCCa -3'
miRNA:   3'- ugUAUGUC-UGAG----UGCGCCGCGg-----GGGc -5'
24369 3' -59 NC_005264.1 + 533 0.66 0.806467
Target:  5'- gACcgAuCAGAC-C-CGCGGCGUUCCCu -3'
miRNA:   3'- -UGuaU-GUCUGaGuGCGCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 64132 0.66 0.806467
Target:  5'- cGCcgAuCAGGCUCGCcaCGGCGCCgcgaUCCGg -3'
miRNA:   3'- -UGuaU-GUCUGAGUGc-GCCGCGG----GGGC- -5'
24369 3' -59 NC_005264.1 + 126891 0.66 0.806467
Target:  5'- -uGUGgGGGCg-GCGuCGGCGCCCCa- -3'
miRNA:   3'- ugUAUgUCUGagUGC-GCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 119560 0.66 0.806467
Target:  5'- gACcgAuCAGAC-C-CGCGGCGUUCCCu -3'
miRNA:   3'- -UGuaU-GUCUGaGuGCGCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 7865 0.66 0.806467
Target:  5'- -uGUGgGGGCg-GCGuCGGCGCCCCa- -3'
miRNA:   3'- ugUAUgUCUGagUGC-GCCGCGGGGgc -5'
24369 3' -59 NC_005264.1 + 56408 0.66 0.797778
Target:  5'- cGCAUAUcGA---GCGCGGCGCCgUCGa -3'
miRNA:   3'- -UGUAUGuCUgagUGCGCCGCGGgGGC- -5'
24369 3' -59 NC_005264.1 + 10958 0.66 0.797778
Target:  5'- cACAUACAG-CUgAugccCGCGaGaCGCCCCCc -3'
miRNA:   3'- -UGUAUGUCuGAgU----GCGC-C-GCGGGGGc -5'
24369 3' -59 NC_005264.1 + 90376 0.66 0.788948
Target:  5'- -gGUACAcGAUcCGaccgGCGGCGCCCgCCGa -3'
miRNA:   3'- ugUAUGU-CUGaGUg---CGCCGCGGG-GGC- -5'
24369 3' -59 NC_005264.1 + 158595 0.66 0.788948
Target:  5'- gGCAaGCcgGGACugaucuaccuUCGCGUGGCGCCgCCu -3'
miRNA:   3'- -UGUaUG--UCUG----------AGUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 116750 0.66 0.788948
Target:  5'- -aGUAUGGAUUCACGCGccCGCCguCCCGc -3'
miRNA:   3'- ugUAUGUCUGAGUGCGCc-GCGG--GGGC- -5'
24369 3' -59 NC_005264.1 + 41096 0.66 0.788948
Target:  5'- gAC-UAgGGcCUCGaggGCGGCGCCCCUu -3'
miRNA:   3'- -UGuAUgUCuGAGUg--CGCCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 39568 0.66 0.788948
Target:  5'- gGCAaGCcgGGACugaucuaccuUCGCGUGGCGCCgCCu -3'
miRNA:   3'- -UGUaUG--UCUG----------AGUGCGCCGCGGgGGc -5'
24369 3' -59 NC_005264.1 + 139139 0.66 0.788948
Target:  5'- gGCGUugAGGgUCGguCGGCGUUCCCGc -3'
miRNA:   3'- -UGUAugUCUgAGUgcGCCGCGGGGGC- -5'
24369 3' -59 NC_005264.1 + 140059 0.66 0.779983
Target:  5'- gGCGUgaGCAGugUCGC-C-GCGCCCCUc -3'
miRNA:   3'- -UGUA--UGUCugAGUGcGcCGCGGGGGc -5'
24369 3' -59 NC_005264.1 + 101306 0.66 0.77908
Target:  5'- uACGUGCGGucauacgaACUCuuucuggauauacGCGCGGCGCUagCCGa -3'
miRNA:   3'- -UGUAUGUC--------UGAG-------------UGCGCCGCGGg-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.