miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24371 5' -56.7 NC_005264.1 + 159929 0.68 0.804452
Target:  5'- -cGGCGacuCCGUCGcuCUcGCCGUCGCCc -3'
miRNA:   3'- gaUCGU---GGCAGCu-GGuUGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 159669 0.68 0.837941
Target:  5'- --cGCGCCGUCGcgcGCgGAggGUCGCCGu -3'
miRNA:   3'- gauCGUGGCAGC---UGgUUggCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 159527 0.67 0.853638
Target:  5'- --uGC-CCGUCGGCCcGCCGUUcggaaGCCc -3'
miRNA:   3'- gauCGuGGCAGCUGGuUGGCAG-----CGGc -5'
24371 5' -56.7 NC_005264.1 + 158332 0.68 0.821526
Target:  5'- aCUGGCACgCGgaacacaagCGGCCGcACCG-CGCCc -3'
miRNA:   3'- -GAUCGUG-GCa--------GCUGGU-UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 158127 0.66 0.919806
Target:  5'- -cAGCGgCGUCugGACCAgcuGCUGUCGUgGa -3'
miRNA:   3'- gaUCGUgGCAG--CUGGU---UGGCAGCGgC- -5'
24371 5' -56.7 NC_005264.1 + 156998 0.67 0.880618
Target:  5'- -gGGCgauaACCG-CGGCCAggcgaguggcggccACCGcCGCCGg -3'
miRNA:   3'- gaUCG----UGGCaGCUGGU--------------UGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 155781 0.75 0.448831
Target:  5'- -cGGCGCCGgcCGGC--GCCGUCGCCGc -3'
miRNA:   3'- gaUCGUGGCa-GCUGguUGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 155559 0.66 0.902248
Target:  5'- --cGCACUGgcggGGCUcuCCGUCGCCa -3'
miRNA:   3'- gauCGUGGCag--CUGGuuGGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 154821 0.66 0.908327
Target:  5'- gUGGCGCCGUCGuggcgggcGCCucuGCCGgcccCGCa- -3'
miRNA:   3'- gAUCGUGGCAGC--------UGGu--UGGCa---GCGgc -5'
24371 5' -56.7 NC_005264.1 + 154593 0.7 0.711438
Target:  5'- -gGGCGCCGcuggccaGACUAACCG-CGCUGg -3'
miRNA:   3'- gaUCGUGGCag-----CUGGUUGGCaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 151401 0.66 0.919806
Target:  5'- uCUGGCgaggauGCCGgCGGCCGGC-GUCcGCCGc -3'
miRNA:   3'- -GAUCG------UGGCaGCUGGUUGgCAG-CGGC- -5'
24371 5' -56.7 NC_005264.1 + 149507 0.69 0.768574
Target:  5'- --cGCGCCGuucccuUCGgcuuaGCCAGgCGUCGCCGu -3'
miRNA:   3'- gauCGUGGC------AGC-----UGGUUgGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 148456 0.66 0.91418
Target:  5'- --cGCugCG-CGACgAACCGuuUCGUCGg -3'
miRNA:   3'- gauCGugGCaGCUGgUUGGC--AGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 147283 0.67 0.875729
Target:  5'- -gAGCugcacGCCGUugaggaugcUGACCGcaaucccauuugACCGUCGCCGc -3'
miRNA:   3'- gaUCG-----UGGCA---------GCUGGU------------UGGCAGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 145466 0.67 0.853638
Target:  5'- -cGGCGCaCGUacacaGACCGcGCCGcCGCCa -3'
miRNA:   3'- gaUCGUG-GCAg----CUGGU-UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 144962 0.69 0.795686
Target:  5'- --cGCGCCGUaGAUCAGCC--CGCCGa -3'
miRNA:   3'- gauCGUGGCAgCUGGUUGGcaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144817 0.68 0.845097
Target:  5'- aUGGUuaaccugACCG-CGGCCGACCcGcCGCCGu -3'
miRNA:   3'- gAUCG-------UGGCaGCUGGUUGG-CaGCGGC- -5'
24371 5' -56.7 NC_005264.1 + 144571 0.71 0.681881
Target:  5'- gCUAGCGCUGUaCGGCCcg-UGUCGCCc -3'
miRNA:   3'- -GAUCGUGGCA-GCUGGuugGCAGCGGc -5'
24371 5' -56.7 NC_005264.1 + 142871 0.67 0.889422
Target:  5'- --uGUugCGUCGACUcgcGCCG-CGCCu -3'
miRNA:   3'- gauCGugGCAGCUGGu--UGGCaGCGGc -5'
24371 5' -56.7 NC_005264.1 + 141419 0.67 0.875729
Target:  5'- gUAGCucCUGUuaCGGCCAACuCGcuaUCGCCGg -3'
miRNA:   3'- gAUCGu-GGCA--GCUGGUUG-GC---AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.