miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24372 3' -58.8 NC_005264.1 + 83396 0.66 0.843113
Target:  5'- cGCUCGucGUCUGCGCGCCgCGggucguugagaaucgUCAUCc -3'
miRNA:   3'- cUGGGCuuCGGAUGCGCGG-GC---------------AGUGG- -5'
24372 3' -58.8 NC_005264.1 + 109561 0.66 0.843113
Target:  5'- -cCCCGAAGCCcGCGCgGCCaggaucuagcgaaaaCGUCuugucuaugGCCg -3'
miRNA:   3'- cuGGGCUUCGGaUGCG-CGG---------------GCAG---------UGG- -5'
24372 3' -58.8 NC_005264.1 + 11860 0.66 0.840751
Target:  5'- cGACCCu-AGCCUACGguagaacgccuugcaGCCgGUgCACCc -3'
miRNA:   3'- -CUGGGcuUCGGAUGCg--------------CGGgCA-GUGG- -5'
24372 3' -58.8 NC_005264.1 + 162429 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 43402 0.66 0.839961
Target:  5'- gGGCgCGAAGCCUACGUcucugguaGUCCG-CAacuCCa -3'
miRNA:   3'- -CUGgGCUUCGGAUGCG--------CGGGCaGU---GG- -5'
24372 3' -58.8 NC_005264.1 + 21251 0.66 0.839961
Target:  5'- cGGCUCG-AGUgUGCGCGCCgCGgaggugguaaCGCCa -3'
miRNA:   3'- -CUGGGCuUCGgAUGCGCGG-GCa---------GUGG- -5'
24372 3' -58.8 NC_005264.1 + 97839 0.66 0.839961
Target:  5'- uACuuGGAcGaacaCUGCaaGCCCGUCACCc -3'
miRNA:   3'- cUGggCUU-Cg---GAUGcgCGGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 10092 0.66 0.831958
Target:  5'- cGCCgGggGCau-CGCGgCCGUguCCg -3'
miRNA:   3'- cUGGgCuuCGgauGCGCgGGCAguGG- -5'
24372 3' -58.8 NC_005264.1 + 38654 0.66 0.831958
Target:  5'- aACCguCGAgaugauGGCCgcgGCgGCGCCCaUCACCa -3'
miRNA:   3'- cUGG--GCU------UCGGa--UG-CGCGGGcAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 157570 0.66 0.831958
Target:  5'- cGCCaCGAGGCCgggcuuggGCGCuucCCCGUaGCCc -3'
miRNA:   3'- cUGG-GCUUCGGa-------UGCGc--GGGCAgUGG- -5'
24372 3' -58.8 NC_005264.1 + 36958 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 5944 0.66 0.831148
Target:  5'- cGGCCCGAAcCCgcgGCGuUGCCUGUUgacgcacaggaauGCCa -3'
miRNA:   3'- -CUGGGCUUcGGa--UGC-GCGGGCAG-------------UGG- -5'
24372 3' -58.8 NC_005264.1 + 155985 0.66 0.831148
Target:  5'- aGCCCGcacgacaGAGgUUGCGCGCUgG-CGCCa -3'
miRNA:   3'- cUGGGC-------UUCgGAUGCGCGGgCaGUGG- -5'
24372 3' -58.8 NC_005264.1 + 3264 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 122291 0.66 0.823783
Target:  5'- cGCuCCaGGAGCCgcaGCGCCaCGUC-CCu -3'
miRNA:   3'- cUG-GG-CUUCGGaugCGCGG-GCAGuGG- -5'
24372 3' -58.8 NC_005264.1 + 53567 0.66 0.823783
Target:  5'- aGCUCGcGGUacgACGCGCCCGaCGCg -3'
miRNA:   3'- cUGGGCuUCGga-UGCGCGGGCaGUGg -5'
24372 3' -58.8 NC_005264.1 + 120958 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 1932 0.66 0.823783
Target:  5'- -cUCCGGcaagAGUCUguGCGCGgCCGUUGCCc -3'
miRNA:   3'- cuGGGCU----UCGGA--UGCGCgGGCAGUGG- -5'
24372 3' -58.8 NC_005264.1 + 87747 0.66 0.823783
Target:  5'- cGGCgCCGgcGCCUGCcgcaGCGCCgCGaagaACCa -3'
miRNA:   3'- -CUG-GGCuuCGGAUG----CGCGG-GCag--UGG- -5'
24372 3' -58.8 NC_005264.1 + 103201 0.66 0.823783
Target:  5'- uGCUCGcuGCUUGCGaGCCCGcaCACCu -3'
miRNA:   3'- cUGGGCuuCGGAUGCgCGGGCa-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.