miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24374 3' -60.6 NC_005264.1 + 661 0.66 0.752203
Target:  5'- cGCGCC-CCCCCCuc-CCCGCUccACc -3'
miRNA:   3'- cUGUGGcGGGGGGuaaGGGCGGcuUG- -5'
24374 3' -60.6 NC_005264.1 + 119688 0.66 0.752203
Target:  5'- cGCGCC-CCCCCCuc-CCCGCUccACc -3'
miRNA:   3'- cUGUGGcGGGGGGuaaGGGCGGcuUG- -5'
24374 3' -60.6 NC_005264.1 + 87107 0.66 0.751273
Target:  5'- cGCACCcagacugGCCUCCgGcgCCCGCgGGGCg -3'
miRNA:   3'- cUGUGG-------CGGGGGgUaaGGGCGgCUUG- -5'
24374 3' -60.6 NC_005264.1 + 113241 0.66 0.742856
Target:  5'- ----nCGCCCCCCGUcgUCCugguCGCCGGcgGCg -3'
miRNA:   3'- cugugGCGGGGGGUA--AGG----GCGGCU--UG- -5'
24374 3' -60.6 NC_005264.1 + 114171 0.66 0.742856
Target:  5'- cGCGCCcagaucuccucGCCCCCCGUgCCaGCgGAAUa -3'
miRNA:   3'- cUGUGG-----------CGGGGGGUAaGGgCGgCUUG- -5'
24374 3' -60.6 NC_005264.1 + 59403 0.66 0.742856
Target:  5'- uGACGCUGUCCCaguCGUgCCUGUCGAugGCa -3'
miRNA:   3'- -CUGUGGCGGGGg--GUAaGGGCGGCU--UG- -5'
24374 3' -60.6 NC_005264.1 + 18530 0.66 0.742856
Target:  5'- gGGCGCCGUcuCCCCCugagggCgCGCCGGc- -3'
miRNA:   3'- -CUGUGGCG--GGGGGuaa---GgGCGGCUug -5'
24374 3' -60.6 NC_005264.1 + 7406 0.66 0.742856
Target:  5'- cGGCGCCGUCgUCCAUUgguucgUgCGCCGggUg -3'
miRNA:   3'- -CUGUGGCGGgGGGUAA------GgGCGGCuuG- -5'
24374 3' -60.6 NC_005264.1 + 94703 0.66 0.742856
Target:  5'- --aACCGCCUaccgaCAUcCCCGCCGAGu -3'
miRNA:   3'- cugUGGCGGGgg---GUAaGGGCGGCUUg -5'
24374 3' -60.6 NC_005264.1 + 159429 0.66 0.733418
Target:  5'- cGCGCCGCCUUCCAUggucgUUCCGCUc--- -3'
miRNA:   3'- cUGUGGCGGGGGGUA-----AGGGCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 38485 0.66 0.733418
Target:  5'- aGCgACCGCUucgucuCCCCGUacUCCCGCCa--- -3'
miRNA:   3'- cUG-UGGCGG------GGGGUA--AGGGCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 157512 0.66 0.733418
Target:  5'- aGCgACCGCUucgucuCCCCGUacUCCCGCCa--- -3'
miRNA:   3'- cUG-UGGCGG------GGGGUA--AGGGCGGcuug -5'
24374 3' -60.6 NC_005264.1 + 30342 0.66 0.733418
Target:  5'- --aGCUGUCCCCCGagucCCCGCagGAGCc -3'
miRNA:   3'- cugUGGCGGGGGGUaa--GGGCGg-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 149369 0.66 0.733418
Target:  5'- --aGCUGUCCCCCGagucCCCGCagGAGCc -3'
miRNA:   3'- cugUGGCGGGGGGUaa--GGGCGg-CUUG- -5'
24374 3' -60.6 NC_005264.1 + 118163 0.66 0.733418
Target:  5'- cGugGCCGCCCauguCUGgcggCUCGUCGAACu -3'
miRNA:   3'- -CugUGGCGGGg---GGUaa--GGGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 12273 0.66 0.732469
Target:  5'- uGGCcguCCGCCCCCaccccaacggcccucCCCGcCCGAGCc -3'
miRNA:   3'- -CUGu--GGCGGGGGguaa-----------GGGC-GGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 131300 0.66 0.732469
Target:  5'- uGGCcguCCGCCCCCaccccaacggcccucCCCGcCCGAGCc -3'
miRNA:   3'- -CUGu--GGCGGGGGguaa-----------GGGC-GGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 159204 0.66 0.721984
Target:  5'- --aACCGCCUCCCAgaaacccccacCCCGCCcacAGCg -3'
miRNA:   3'- cugUGGCGGGGGGUaa---------GGGCGGc--UUG- -5'
24374 3' -60.6 NC_005264.1 + 117707 0.66 0.714304
Target:  5'- -uCACCGCCCCggauaCuagCgUGCCGAGCa -3'
miRNA:   3'- cuGUGGCGGGGg----GuaaGgGCGGCUUG- -5'
24374 3' -60.6 NC_005264.1 + 37202 0.66 0.714304
Target:  5'- cGGCGCCGCUCCauggacUCCCGaCCGGc- -3'
miRNA:   3'- -CUGUGGCGGGGggua--AGGGC-GGCUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.