miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24375 3' -55.6 NC_005264.1 + 121967 0.66 0.944194
Target:  5'- uGCUGUUGUUuaGCGCGcAAGCGGGUUUc -3'
miRNA:   3'- gCGGUAGCAGc-CGCGC-UUUGUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 111725 0.66 0.939632
Target:  5'- cCGCCAgCGUCgaGGCGCG-AGCAGa--- -3'
miRNA:   3'- -GCGGUaGCAG--CCGCGCuUUGUCcaga -5'
24375 3' -55.6 NC_005264.1 + 148424 0.66 0.939632
Target:  5'- cCGCCAUaCG--GGCGUGGGACGGaGUUa -3'
miRNA:   3'- -GCGGUA-GCagCCGCGCUUUGUC-CAGa -5'
24375 3' -55.6 NC_005264.1 + 144991 0.66 0.939632
Target:  5'- aCGCgGUCGaacagCGcGCGCGAGAUggAGGaUCUa -3'
miRNA:   3'- -GCGgUAGCa----GC-CGCGCUUUG--UCC-AGA- -5'
24375 3' -55.6 NC_005264.1 + 61905 0.66 0.936784
Target:  5'- uGCCGUCuaucaCGGCGCGcgcuaacuuaauCAGGUCg -3'
miRNA:   3'- gCGGUAGca---GCCGCGCuuu---------GUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 7077 0.66 0.934838
Target:  5'- gCGCCGUCGcgCuGCGgGGAACugAGGUUUc -3'
miRNA:   3'- -GCGGUAGCa-GcCGCgCUUUG--UCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 127849 0.66 0.934838
Target:  5'- gGCCggCGgucuagaaccCGGCGCGcgAAugGGGUCUc -3'
miRNA:   3'- gCGGuaGCa---------GCCGCGC--UUugUCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 126104 0.66 0.934838
Target:  5'- gCGCCGUCGcgCuGCGgGGAACugAGGUUUc -3'
miRNA:   3'- -GCGGUAGCa-GcCGCgCUUUG--UCCAGA- -5'
24375 3' -55.6 NC_005264.1 + 22230 0.66 0.929808
Target:  5'- uCGCC-UCGUCGGCGgucuGGGC-GGUCg -3'
miRNA:   3'- -GCGGuAGCAGCCGCgc--UUUGuCCAGa -5'
24375 3' -55.6 NC_005264.1 + 39084 0.66 0.929808
Target:  5'- aCGCCGgc-UCGGCGgGcAGCGGcGUCUg -3'
miRNA:   3'- -GCGGUagcAGCCGCgCuUUGUC-CAGA- -5'
24375 3' -55.6 NC_005264.1 + 113365 0.66 0.929808
Target:  5'- uGcCCGUCGaauaCGGCGCGGGucaGGGUUa -3'
miRNA:   3'- gC-GGUAGCa---GCCGCGCUUug-UCCAGa -5'
24375 3' -55.6 NC_005264.1 + 66624 0.66 0.929808
Target:  5'- gCGCCGUCG-CGGCcCGAGGCAaG-CUg -3'
miRNA:   3'- -GCGGUAGCaGCCGcGCUUUGUcCaGA- -5'
24375 3' -55.6 NC_005264.1 + 158111 0.66 0.929808
Target:  5'- aCGCCGgc-UCGGCGgGcAGCGGcGUCUg -3'
miRNA:   3'- -GCGGUagcAGCCGCgCuUUGUC-CAGA- -5'
24375 3' -55.6 NC_005264.1 + 60847 0.66 0.924544
Target:  5'- gCGUCggCGUCGGCGCGugcGCGGcaaaguuuucuaGUCUc -3'
miRNA:   3'- -GCGGuaGCAGCCGCGCuu-UGUC------------CAGA- -5'
24375 3' -55.6 NC_005264.1 + 29911 0.66 0.924544
Target:  5'- gCGCUAcccCGUCGGCGCuAGGgAGGUa- -3'
miRNA:   3'- -GCGGUa--GCAGCCGCGcUUUgUCCAga -5'
24375 3' -55.6 NC_005264.1 + 32864 0.66 0.919044
Target:  5'- uCGUCAUCGUCGGUcccGCGGu---GGUUg -3'
miRNA:   3'- -GCGGUAGCAGCCG---CGCUuuguCCAGa -5'
24375 3' -55.6 NC_005264.1 + 151890 0.66 0.919044
Target:  5'- uCGUCAUCGUCGGUcccGCGGu---GGUUg -3'
miRNA:   3'- -GCGGUAGCAGCCG---CGCUuuguCCAGa -5'
24375 3' -55.6 NC_005264.1 + 116380 0.67 0.915054
Target:  5'- uGCCGucgcgggagaccucuUCGUCGGCucucgcugagcccGCG--GCAGGUCg -3'
miRNA:   3'- gCGGU---------------AGCAGCCG-------------CGCuuUGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 57364 0.67 0.907341
Target:  5'- uCGCCGUCGUCGcuggaGgGGAgucuuaccugacGCGGGUCg -3'
miRNA:   3'- -GCGGUAGCAGCcg---CgCUU------------UGUCCAGa -5'
24375 3' -55.6 NC_005264.1 + 18428 0.67 0.901141
Target:  5'- gCGCCcucUCGcUCGGCGCG----GGGUCg -3'
miRNA:   3'- -GCGGu--AGC-AGCCGCGCuuugUCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.