miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24376 5' -53.6 NC_005264.1 + 100209 0.66 0.973949
Target:  5'- gCGCUUGGAc----GGCGGGCGAgaagaccuCGCa -3'
miRNA:   3'- aGCGAGUCUcauaaCCGCCCGUU--------GCG- -5'
24376 5' -53.6 NC_005264.1 + 52328 0.66 0.973949
Target:  5'- -aGCuUCAGGGUcgcugGGCGGGC--UGCc -3'
miRNA:   3'- agCG-AGUCUCAuaa--CCGCCCGuuGCG- -5'
24376 5' -53.6 NC_005264.1 + 58051 0.66 0.973409
Target:  5'- cUCGCgaaAGAGgagacucgcgUGGUGGGCAuuucugGCGUu -3'
miRNA:   3'- -AGCGag-UCUCaua-------ACCGCCCGU------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 31178 0.66 0.97117
Target:  5'- cCGCcaaCGGucUGgcGGCGGGCAcCGCa -3'
miRNA:   3'- aGCGa--GUCucAUaaCCGCCCGUuGCG- -5'
24376 5' -53.6 NC_005264.1 + 110364 0.66 0.968492
Target:  5'- -aGUUCgaGGAGUAUgcuaauaccgccgacGGCGGGCGcAUGCu -3'
miRNA:   3'- agCGAG--UCUCAUAa--------------CCGCCCGU-UGCG- -5'
24376 5' -53.6 NC_005264.1 + 162475 0.66 0.968184
Target:  5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3'
miRNA:   3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 43448 0.66 0.968184
Target:  5'- cCGC-CAGAGaGggGGgaaguCGGGCAACGg -3'
miRNA:   3'- aGCGaGUCUCaUaaCC-----GCCCGUUGCg -5'
24376 5' -53.6 NC_005264.1 + 155736 0.66 0.968184
Target:  5'- gCGCggGGGGUuaUGGUGGGC--CGCc -3'
miRNA:   3'- aGCGagUCUCAuaACCGCCCGuuGCG- -5'
24376 5' -53.6 NC_005264.1 + 74075 0.66 0.966931
Target:  5'- aCGCggcaucCGGAGUAguguggucguacaUGGCGcGGuCGACGCu -3'
miRNA:   3'- aGCGa-----GUCUCAUa------------ACCGC-CC-GUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 89445 0.66 0.964985
Target:  5'- cUUGgUCAGcgGGUGUUGGCuuGGCAgagccGCGCc -3'
miRNA:   3'- -AGCgAGUC--UCAUAACCGc-CCGU-----UGCG- -5'
24376 5' -53.6 NC_005264.1 + 25910 0.66 0.964985
Target:  5'- -gGCgaaCAGA----UGGCGGGgGGCGCu -3'
miRNA:   3'- agCGa--GUCUcauaACCGCCCgUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 18615 0.66 0.961567
Target:  5'- aUGCUCaAGAGUGcgaaagugacgUGGUGGGguGcCGCc -3'
miRNA:   3'- aGCGAG-UCUCAUa----------ACCGCCCguU-GCG- -5'
24376 5' -53.6 NC_005264.1 + 119289 0.66 0.961567
Target:  5'- gUUGCUCGcGGU---GGCuGGGCAGCuGCa -3'
miRNA:   3'- -AGCGAGUcUCAuaaCCG-CCCGUUG-CG- -5'
24376 5' -53.6 NC_005264.1 + 30101 0.66 0.957925
Target:  5'- aUCGC---GAGUcgagauGCGGGCGGCGCg -3'
miRNA:   3'- -AGCGaguCUCAuaac--CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 20524 0.66 0.957548
Target:  5'- aCGuCUCu--GUGUccGGCGGGCAcgaagaaGCGCg -3'
miRNA:   3'- aGC-GAGucuCAUAa-CCGCCCGU-------UGCG- -5'
24376 5' -53.6 NC_005264.1 + 153282 0.67 0.954053
Target:  5'- -gGCUUcu-GUAgcgagGcGCGGGCGACGCg -3'
miRNA:   3'- agCGAGucuCAUaa---C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 34255 0.67 0.954053
Target:  5'- -gGCUUcu-GUAgcgagGcGCGGGCGACGCg -3'
miRNA:   3'- agCGAGucuCAUaa---C-CGCCCGUUGCG- -5'
24376 5' -53.6 NC_005264.1 + 71363 0.67 0.954053
Target:  5'- -aGC-CGGAGgccaGGUGGGCAACa- -3'
miRNA:   3'- agCGaGUCUCauaaCCGCCCGUUGcg -5'
24376 5' -53.6 NC_005264.1 + 23308 0.67 0.954053
Target:  5'- aUCGC-CAcGAGUGc-GGCGGGCcacaacauCGCg -3'
miRNA:   3'- -AGCGaGU-CUCAUaaCCGCCCGuu------GCG- -5'
24376 5' -53.6 NC_005264.1 + 91495 0.67 0.953653
Target:  5'- cCGCUgCGGGGUuucGGCGGcGUAgaaugccGCGCa -3'
miRNA:   3'- aGCGA-GUCUCAuaaCCGCC-CGU-------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.