miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24378 3' -56.1 NC_005264.1 + 139064 0.73 0.546554
Target:  5'- cGCGGAGGCGCCGguuCCUUGCUGUcGCc- -3'
miRNA:   3'- -UGCUUUUGCGGC---GGAACGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 138420 0.77 0.310208
Target:  5'- gGCGAGAACG-UGCUUUGCgucgCGCUGCUCg -3'
miRNA:   3'- -UGCUUUUGCgGCGGAACG----GCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 137956 0.72 0.607631
Target:  5'- uACGaAGAGCGaaGCCUcgUGCCGCcccgGCUCc -3'
miRNA:   3'- -UGC-UUUUGCggCGGA--ACGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 136439 0.66 0.892312
Target:  5'- gGCGGAagagcAugGgCGCUgagGCCGC-GCUCa -3'
miRNA:   3'- -UGCUU-----UugCgGCGGaa-CGGCGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 135377 0.67 0.863633
Target:  5'- -aGAAAAUGUC-CUUUGCUGCgccGCUCg -3'
miRNA:   3'- ugCUUUUGCGGcGGAACGGCGa--CGAG- -5'
24378 3' -56.1 NC_005264.1 + 132599 0.68 0.814426
Target:  5'- aGCGu-GGCaCCGCUUUGCCGC-GCUg -3'
miRNA:   3'- -UGCuuUUGcGGCGGAACGGCGaCGAg -5'
24378 3' -56.1 NC_005264.1 + 132225 0.7 0.669348
Target:  5'- cGCGGAuccguCGCCGCCgccgucGCCggGCUGCUUc -3'
miRNA:   3'- -UGCUUuu---GCGGCGGaa----CGG--CGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 131236 0.67 0.831582
Target:  5'- gGCGAugcGCGCCGCCUcGCCagagaGCaGaCUCg -3'
miRNA:   3'- -UGCUuu-UGCGGCGGAaCGG-----CGaC-GAG- -5'
24378 3' -56.1 NC_005264.1 + 130989 0.71 0.648808
Target:  5'- gACGAGGucGCGCCcauGUCUUGCCGCgcgcgGCa- -3'
miRNA:   3'- -UGCUUU--UGCGG---CGGAACGGCGa----CGag -5'
24378 3' -56.1 NC_005264.1 + 129582 0.67 0.871134
Target:  5'- cGCGGAu-CG-CGCgUUcGCCGCUGCUUc -3'
miRNA:   3'- -UGCUUuuGCgGCGgAA-CGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 129484 0.67 0.851195
Target:  5'- aGCGGAu-CGCCGCCgauagGCCGgaucccggucggaacCUGCUa -3'
miRNA:   3'- -UGCUUuuGCGGCGGaa---CGGC---------------GACGAg -5'
24378 3' -56.1 NC_005264.1 + 128050 0.66 0.885478
Target:  5'- cGCGucGAugGCCGCCc-GCaugaGCgGCUCa -3'
miRNA:   3'- -UGCu-UUugCGGCGGaaCGg---CGaCGAG- -5'
24378 3' -56.1 NC_005264.1 + 127241 0.7 0.70999
Target:  5'- cACGGAGACGCgGCCaucggccgaaGCCGCagcaGCUCc -3'
miRNA:   3'- -UGCUUUUGCGgCGGaa--------CGGCGa---CGAG- -5'
24378 3' -56.1 NC_005264.1 + 126673 0.75 0.440795
Target:  5'- cACG-AAACGCCGCC-UGCCgGCUcggaggGCUCg -3'
miRNA:   3'- -UGCuUUUGCGGCGGaACGG-CGA------CGAG- -5'
24378 3' -56.1 NC_005264.1 + 126359 1.08 0.003004
Target:  5'- cACGAAAACGCCGCCUUGCCGCUGCUCc -3'
miRNA:   3'- -UGCUUUUGCGGCGGAACGGCGACGAG- -5'
24378 3' -56.1 NC_005264.1 + 126087 0.68 0.805592
Target:  5'- gGCGAcgGCGCCgGCCggcGCCGUcGCg- -3'
miRNA:   3'- -UGCUuuUGCGG-CGGaa-CGGCGaCGag -5'
24378 3' -56.1 NC_005264.1 + 124172 0.68 0.814426
Target:  5'- gACGggGGCGUCGCCgucgucGUCGgUGC-Cg -3'
miRNA:   3'- -UGCuuUUGCGGCGGaa----CGGCgACGaG- -5'
24378 3' -56.1 NC_005264.1 + 123718 0.65 0.9096
Target:  5'- gGCGAGuGGCGCCGCguccacgacagcagCUggucagacGCCGCUGCcCg -3'
miRNA:   3'- -UGCUU-UUGCGGCG--------------GAa-------CGGCGACGaG- -5'
24378 3' -56.1 NC_005264.1 + 123645 0.67 0.848004
Target:  5'- gGCGuAGGCGCguucucgaaaauCGCCggGCCGCUuCUCg -3'
miRNA:   3'- -UGCuUUUGCG------------GCGGaaCGGCGAcGAG- -5'
24378 3' -56.1 NC_005264.1 + 122767 0.7 0.699907
Target:  5'- gACGAGGAgcggggccucuUGCCGCCggGgCGCUGCg- -3'
miRNA:   3'- -UGCUUUU-----------GCGGCGGaaCgGCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.