miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24380 5' -45.4 NC_005264.1 + 93458 0.66 0.999998
Target:  5'- gGUGGucGCCGCGGAGaGGAuuUAUACGc -3'
miRNA:   3'- gUAUUucUGGUGCCUCgCUU--AUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 83129 0.66 0.999998
Target:  5'- ---cAAGGCCGCGGAGgCGcGUcUGCc -3'
miRNA:   3'- guauUUCUGGUGCCUC-GCuUAuAUGc -5'
24380 5' -45.4 NC_005264.1 + 103793 0.66 0.999998
Target:  5'- ---cAAGAUCGCGGuuCGGAUGcGCGg -3'
miRNA:   3'- guauUUCUGGUGCCucGCUUAUaUGC- -5'
24380 5' -45.4 NC_005264.1 + 36438 0.66 0.999997
Target:  5'- ----cAGGCCGCGGAGaCGAcu-UGCc -3'
miRNA:   3'- guauuUCUGGUGCCUC-GCUuauAUGc -5'
24380 5' -45.4 NC_005264.1 + 21241 0.66 0.999997
Target:  5'- gCGUu--GACgACGGcuCGAGUGUGCGc -3'
miRNA:   3'- -GUAuuuCUGgUGCCucGCUUAUAUGC- -5'
24380 5' -45.4 NC_005264.1 + 19433 0.66 0.999995
Target:  5'- gGUGu-GGCCGCGGGGCGcggGUGgGu -3'
miRNA:   3'- gUAUuuCUGGUGCCUCGCuuaUAUgC- -5'
24380 5' -45.4 NC_005264.1 + 131481 0.66 0.999995
Target:  5'- -cUAAAGGCC-CGGcaggcgucAGCGAGUucuUGCGu -3'
miRNA:   3'- guAUUUCUGGuGCC--------UCGCUUAu--AUGC- -5'
24380 5' -45.4 NC_005264.1 + 12454 0.66 0.999995
Target:  5'- -cUAAAGGCC-CGGcaggcgucAGCGAGUucuUGCGu -3'
miRNA:   3'- guAUUUCUGGuGCC--------UCGCUUAu--AUGC- -5'
24380 5' -45.4 NC_005264.1 + 3617 0.66 0.999993
Target:  5'- --gGGGGGCCGCGaGGGCGGGc--GCGc -3'
miRNA:   3'- guaUUUCUGGUGC-CUCGCUUauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 148664 0.66 0.999993
Target:  5'- --gGAAGACCGCGauacGCGggUAgugaACGa -3'
miRNA:   3'- guaUUUCUGGUGCcu--CGCuuAUa---UGC- -5'
24380 5' -45.4 NC_005264.1 + 122644 0.66 0.999993
Target:  5'- --gGGGGGCCGCGaGGGCGGGc--GCGc -3'
miRNA:   3'- guaUUUCUGGUGC-CUCGCUUauaUGC- -5'
24380 5' -45.4 NC_005264.1 + 48408 0.66 0.999993
Target:  5'- -----cGGCCA-GGAGCGggUGgggGCa -3'
miRNA:   3'- guauuuCUGGUgCCUCGCuuAUa--UGc -5'
24380 5' -45.4 NC_005264.1 + 18613 0.66 0.99999
Target:  5'- --aGAAGACCgcaGCGGAcGUGuuUGUGCa -3'
miRNA:   3'- guaUUUCUGG---UGCCU-CGCuuAUAUGc -5'
24380 5' -45.4 NC_005264.1 + 59742 0.66 0.99999
Target:  5'- --aGAAGAgUCAUGGGGCGGcgGcUGCGa -3'
miRNA:   3'- guaUUUCU-GGUGCCUCGCUuaU-AUGC- -5'
24380 5' -45.4 NC_005264.1 + 95490 0.66 0.99999
Target:  5'- -----uGGCUACGGAGCGGAg----- -3'
miRNA:   3'- guauuuCUGGUGCCUCGCUUauaugc -5'
24380 5' -45.4 NC_005264.1 + 6222 0.66 0.99999
Target:  5'- ----cGGGCCuACGGAGaCGggUucUGCGg -3'
miRNA:   3'- guauuUCUGG-UGCCUC-GCuuAu-AUGC- -5'
24380 5' -45.4 NC_005264.1 + 103813 0.67 0.999981
Target:  5'- ---cGGGACCGCGGGGCu----UGCGc -3'
miRNA:   3'- guauUUCUGGUGCCUCGcuuauAUGC- -5'
24380 5' -45.4 NC_005264.1 + 22938 0.67 0.999981
Target:  5'- --gGAAGACCAUGG-GUGAc--UGCGa -3'
miRNA:   3'- guaUUUCUGGUGCCuCGCUuauAUGC- -5'
24380 5' -45.4 NC_005264.1 + 162815 0.67 0.999981
Target:  5'- aCAgcuAGGGCCGCGGcguuauGGCGugccgGUGCGa -3'
miRNA:   3'- -GUau-UUCUGGUGCC------UCGCuua--UAUGC- -5'
24380 5' -45.4 NC_005264.1 + 84066 0.67 0.999973
Target:  5'- uCAUAAAGAUCGCGGuG-GAAaggGUGCu -3'
miRNA:   3'- -GUAUUUCUGGUGCCuCgCUUa--UAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.