miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 159533 0.66 0.987793
Target:  5'- cUUGCACGGCGcGCGauccCGCGCgagcucacgacucuGGCGCUg -3'
miRNA:   3'- -AGUGUGCUGUuUGCa---GUGCG--------------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 159206 0.75 0.682977
Target:  5'- cCAuCGCGACGAAUGUCA-GC-GCGCCc -3'
miRNA:   3'- aGU-GUGCUGUUUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 159057 0.67 0.981117
Target:  5'- aCGCAgauCGGCGGcgGUCGaccaagggccCGCAGCGCCc -3'
miRNA:   3'- aGUGU---GCUGUUugCAGU----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158694 0.68 0.968184
Target:  5'- -uGgGCGGCAAGCaUCGCGacaAGCgGCCg -3'
miRNA:   3'- agUgUGCUGUUUGcAGUGCg--UCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 158589 0.8 0.412724
Target:  5'- cCGCGCGGCAAGcCGggacugaucuaccuUCGCGUGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUU-GC--------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158411 0.69 0.951617
Target:  5'- cUCAgACGAUGacGACGUCggcgaagggggcacuGCGCugcucAGCGCCg -3'
miRNA:   3'- -AGUgUGCUGU--UUGCAG---------------UGCG-----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158336 0.69 0.931123
Target:  5'- gCACGCGgaacACAAGCGgC-CGCAccGCGCCc -3'
miRNA:   3'- aGUGUGC----UGUUUGCaGuGCGU--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158132 0.67 0.97117
Target:  5'- gCGuCugGACcAGCugcuGUCguggACGCGGCGCCa -3'
miRNA:   3'- aGU-GugCUGuUUG----CAG----UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 158065 0.66 0.983142
Target:  5'- -uGCGCGAacGGCGcCGCGCagaaGGCGCa -3'
miRNA:   3'- agUGUGCUguUUGCaGUGCG----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 157205 0.75 0.682977
Target:  5'- cCGCGCugugggGACAccuAGCGUCGCGCGGC-CCg -3'
miRNA:   3'- aGUGUG------CUGU---UUGCAGUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 157070 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 157048 0.66 0.988241
Target:  5'- aCAgGCG-CGAACag-ACGUGGCGCCa -3'
miRNA:   3'- aGUgUGCuGUUUGcagUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 156690 0.73 0.800316
Target:  5'- gCACGCGAUGcgcGACGggCGCGCGGC-CCu -3'
miRNA:   3'- aGUGUGCUGU---UUGCa-GUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 156597 0.66 0.983142
Target:  5'- aC-CGCGACGGAggcggcaaGUCuCGCGGCgGCCg -3'
miRNA:   3'- aGuGUGCUGUUUg-------CAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 156530 0.66 0.988241
Target:  5'- cCACGCGAagccuCGcCGCGCAaGUGCa -3'
miRNA:   3'- aGUGUGCUguuu-GCaGUGCGU-CGCGg -5'
24382 3' -52.3 NC_005264.1 + 156174 0.7 0.920247
Target:  5'- -uGCGCGGCuuuGCGgcgugGCGGCGCCg -3'
miRNA:   3'- agUGUGCUGuu-UGCagug-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 155988 0.88 0.159603
Target:  5'- cCGCACGACAGAgGUUGCGCgcuGGCGCCa -3'
miRNA:   3'- aGUGUGCUGUUUgCAGUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 155774 0.67 0.981117
Target:  5'- -aGCGCGAC-GGCGcCgGC-CGGCGCCg -3'
miRNA:   3'- agUGUGCUGuUUGCaG-UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 155431 0.7 0.895571
Target:  5'- gCGCACGAacCAAugG--ACGaCGGCGCCg -3'
miRNA:   3'- aGUGUGCU--GUUugCagUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 155159 0.69 0.936194
Target:  5'- cUACACGACGGACGagccCAUGgAG-GCCg -3'
miRNA:   3'- aGUGUGCUGUUUGCa---GUGCgUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.