miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 154811 0.66 0.91328
Target:  5'- gGGACAagacCGUGACCguGgauguuuucucuGGAUucauGGCGCCg -3'
miRNA:   3'- aCCUGU----GUACUGGguU------------CCUG----CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 151522 0.66 0.91328
Target:  5'- aGGACAagcuagaACUCAuGGGCGGCGUg -3'
miRNA:   3'- aCCUGUguac---UGGGUuCCUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 30859 0.66 0.91328
Target:  5'- gGcGGCGCGccGCCCGguAGGcaACGGCGUCu -3'
miRNA:   3'- aC-CUGUGUacUGGGU--UCC--UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 28467 0.66 0.91328
Target:  5'- cGGACAC-UGGCUaaaucuGcGAUGGCGCg -3'
miRNA:   3'- aCCUGUGuACUGGguu---C-CUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 3810 0.66 0.91328
Target:  5'- cGGucCGCGaguucgGGCCC--GGGCGGgGCCg -3'
miRNA:   3'- aCCu-GUGUa-----CUGGGuuCCUGCCgCGG- -5'
24383 5' -56.6 NC_005264.1 + 149885 0.66 0.91328
Target:  5'- gGcGGCGCGccGCCCGguAGGcaACGGCGUCu -3'
miRNA:   3'- aC-CUGUGUacUGGGU--UCC--UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 81602 0.66 0.91328
Target:  5'- -cGACaACAUGccgcuGCgCCAGGGACGGCcgaugcucauauGCCu -3'
miRNA:   3'- acCUG-UGUAC-----UG-GGUUCCUGCCG------------CGG- -5'
24383 5' -56.6 NC_005264.1 + 7656 0.66 0.91328
Target:  5'- gGGAUACGUG--UCGGGGucuaucuCGGCGUCg -3'
miRNA:   3'- aCCUGUGUACugGGUUCCu------GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 122836 0.66 0.91328
Target:  5'- cGGucCGCGaguucgGGCCC--GGGCGGgGCCg -3'
miRNA:   3'- aCCu-GUGUa-----CUGGGuuCCUGCCgCGG- -5'
24383 5' -56.6 NC_005264.1 + 5752 0.66 0.912697
Target:  5'- cGGAUGCAUGAgguaaaaUCCGAGcgugucaauagaGAacUGGCGCCa -3'
miRNA:   3'- aCCUGUGUACU-------GGGUUC------------CU--GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 92163 0.66 0.907337
Target:  5'- cGGGCGuaaaaAUuGCCUGccGGCGGCGCCg -3'
miRNA:   3'- aCCUGUg----UAcUGGGUucCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 98682 0.66 0.907337
Target:  5'- cGGcgcuuGCACAccGGCCgGAucGCGGCGCCg -3'
miRNA:   3'- aCC-----UGUGUa-CUGGgUUccUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 52930 0.66 0.907337
Target:  5'- gGGGCauuGCAUGGCCgCGcccGCGGCGCa -3'
miRNA:   3'- aCCUG---UGUACUGG-GUuccUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 48914 0.66 0.907337
Target:  5'- uUGG-UACGUGccaacuGCCCGAGGACauUGCCg -3'
miRNA:   3'- -ACCuGUGUAC------UGGGUUCCUGccGCGG- -5'
24383 5' -56.6 NC_005264.1 + 161783 0.66 0.90673
Target:  5'- aUGGACACGUgccgagcGACCCG-GG-UGGCcaguuacgGCCg -3'
miRNA:   3'- -ACCUGUGUA-------CUGGGUuCCuGCCG--------CGG- -5'
24383 5' -56.6 NC_005264.1 + 42757 0.66 0.90673
Target:  5'- aUGGACACGUgccgagcGACCCG-GG-UGGCcaguuacgGCCg -3'
miRNA:   3'- -ACCUGUGUA-------CUGGGUuCCuGCCG--------CGG- -5'
24383 5' -56.6 NC_005264.1 + 27722 0.66 0.905509
Target:  5'- cGcACACuaaaauuuuaccgaAUGACCCcgccGGGAgGGUGCCg -3'
miRNA:   3'- aCcUGUG--------------UACUGGGu---UCCUgCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 37270 0.66 0.901164
Target:  5'- uUGGGCGCgAUGccGCCCAuucAGGuuuauGCGCCg -3'
miRNA:   3'- -ACCUGUG-UAC--UGGGU---UCCugc--CGCGG- -5'
24383 5' -56.6 NC_005264.1 + 41648 0.66 0.901164
Target:  5'- cGGcaGCGCGgccgGGUCUAAGGACGuGCGCa -3'
miRNA:   3'- aCC--UGUGUa---CUGGGUUCCUGC-CGCGg -5'
24383 5' -56.6 NC_005264.1 + 150686 0.66 0.901164
Target:  5'- -cGACagACGaGACCCAGcaacGGGCaGCGCCg -3'
miRNA:   3'- acCUG--UGUaCUGGGUU----CCUGcCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.