miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 70879 0.66 0.778729
Target:  5'- gGAGU--UUCCCUCGGCCCCUGGuCAUc -3'
miRNA:   3'- -CUCGccAAGGGGGUCGGGGGUUuGUG- -5'
24384 3' -59.5 NC_005264.1 + 3995 0.66 0.778729
Target:  5'- aGGGCGGcacaugCCUCCucGCCCaCCAGGgGCu -3'
miRNA:   3'- -CUCGCCaa----GGGGGu-CGGG-GGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 19248 0.66 0.778729
Target:  5'- -cGCGccauucucGUUCCCuCCGGgCCCCGGGgACg -3'
miRNA:   3'- cuCGC--------CAAGGG-GGUCgGGGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 47205 0.66 0.778729
Target:  5'- uGAGCGGggCCa-CGGCCgUCGAugGCu -3'
miRNA:   3'- -CUCGCCaaGGggGUCGGgGGUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 123022 0.66 0.778729
Target:  5'- aGGGCGGcacaugCCUCCucGCCCaCCAGGgGCu -3'
miRNA:   3'- -CUCGCCaa----GGGGGu-CGGG-GGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 115246 0.66 0.769545
Target:  5'- -cGCGaGUcUCCCCCAacgcGUCCCCGcgagccauaucuGGCACg -3'
miRNA:   3'- cuCGC-CA-AGGGGGU----CGGGGGU------------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 128431 0.66 0.769545
Target:  5'- -cGCaGGcaaUCCCCC-GCCCCCAuuAGCGa -3'
miRNA:   3'- cuCG-CCa--AGGGGGuCGGGGGU--UUGUg -5'
24384 3' -59.5 NC_005264.1 + 129549 0.66 0.769545
Target:  5'- cGAGCGGgUCCUgugcggcgCC-GCCCUCAGggGCGCg -3'
miRNA:   3'- -CUCGCCaAGGG--------GGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 9404 0.66 0.769545
Target:  5'- -cGCaGGcaaUCCCCC-GCCCCCAuuAGCGa -3'
miRNA:   3'- cuCG-CCa--AGGGGGuCGGGGGU--UUGUg -5'
24384 3' -59.5 NC_005264.1 + 107661 0.66 0.769545
Target:  5'- -cGCGGUcgccgCCUUCAGCCgcgCCCAGAgGCc -3'
miRNA:   3'- cuCGCCAa----GGGGGUCGG---GGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 10522 0.66 0.769545
Target:  5'- cGAGCGGgUCCUgugcggcgCC-GCCCUCAGggGCGCg -3'
miRNA:   3'- -CUCGCCaAGGG--------GGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 95800 0.66 0.76862
Target:  5'- uGGGCGGUgagccuaUCCUgaGGCCCUCgAAGCAUg -3'
miRNA:   3'- -CUCGCCA-------AGGGggUCGGGGG-UUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 13368 0.66 0.750831
Target:  5'- cGAGcCGGggCCCgCGGCuCCCCcGAgACc -3'
miRNA:   3'- -CUC-GCCaaGGGgGUCG-GGGGuUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 153795 0.66 0.750831
Target:  5'- uGGCGGUgacuUUCCCCaAGCCaggCgCGAACGCg -3'
miRNA:   3'- cUCGCCA----AGGGGG-UCGGg--G-GUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 159340 0.66 0.750831
Target:  5'- cGGCGaGgaUCCCCuGCCCCCcgcCGCg -3'
miRNA:   3'- cUCGC-CaaGGGGGuCGGGGGuuuGUG- -5'
24384 3' -59.5 NC_005264.1 + 26816 0.66 0.750831
Target:  5'- aAGUGGgccgcgCCgCUCuugAGCCCCCAGACAa -3'
miRNA:   3'- cUCGCCaa----GG-GGG---UCGGGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 132395 0.66 0.750831
Target:  5'- cGAGcCGGggCCCgCGGCuCCCCcGAgACc -3'
miRNA:   3'- -CUC-GCCaaGGGgGUCG-GGGGuUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 40313 0.66 0.750831
Target:  5'- cGGCGaGgaUCCCCuGCCCCCcgcCGCg -3'
miRNA:   3'- cUCGC-CaaGGGGGuCGGGGGuuuGUG- -5'
24384 3' -59.5 NC_005264.1 + 25310 0.66 0.735565
Target:  5'- aAGCGGUcuUCCucgaagucgucguagUugCCGGCCCCCAGAgACu -3'
miRNA:   3'- cUCGCCA--AGG---------------G--GGUCGGGGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 131670 0.66 0.731713
Target:  5'- -cGCucg-CCCuCCGGCCCCCGucACACg -3'
miRNA:   3'- cuCGccaaGGG-GGUCGGGGGUu-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.