miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 72015 0.66 0.847754
Target:  5'- uCGAcGUG-CGCGGcCGCCacACGCGAGAc -3'
miRNA:   3'- -GCU-CACgGCGUC-GCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 20255 0.66 0.847754
Target:  5'- aGGG-GuuGCGGCGCgGccuCGCGGAGg -3'
miRNA:   3'- gCUCaCggCGUCGCGgCuu-GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 129312 0.66 0.847754
Target:  5'- ----cGCgGCAGCGCCGAcccuAUGgGAAAg -3'
miRNA:   3'- gcucaCGgCGUCGCGGCU----UGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 15452 0.66 0.839766
Target:  5'- uGAGUGUgGacaAGCGCgacGACGCGAAAg -3'
miRNA:   3'- gCUCACGgCg--UCGCGgc-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 135113 0.66 0.839766
Target:  5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3'
miRNA:   3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 38589 0.66 0.838957
Target:  5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3'
miRNA:   3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 157616 0.66 0.838957
Target:  5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3'
miRNA:   3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 94408 0.66 0.831593
Target:  5'- ----aGaCCGCGGCGCgGAcuGCGCGAu- -3'
miRNA:   3'- gcucaC-GGCGUCGCGgCU--UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 24196 0.66 0.831593
Target:  5'- aGucUGgCGCGGUGCCGGugGcCGAAGc -3'
miRNA:   3'- gCucACgGCGUCGCGGCUugC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 31839 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 95324 0.66 0.831593
Target:  5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3'
miRNA:   3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 158850 0.66 0.831593
Target:  5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3'
miRNA:   3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 150865 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 117424 0.66 0.831593
Target:  5'- gGGGcUGUCGCGGCGCgcaGGGCGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCGCGg--CUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 91888 0.66 0.823242
Target:  5'- gCGGGgugguugGCCGCGGCaGCgaugggCGGGCGCGGc- -3'
miRNA:   3'- -GCUCa------CGGCGUCG-CG------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 154813 0.66 0.823242
Target:  5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3'
miRNA:   3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 109692 0.66 0.823242
Target:  5'- aCGAGcaguaccGCCGUAGCGCUacugaaGugGCGAGAa -3'
miRNA:   3'- -GCUCa------CGGCGUCGCGGc-----UugCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 35787 0.66 0.823242
Target:  5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3'
miRNA:   3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 34638 0.66 0.814721
Target:  5'- gGGGUGuUCGCGGCcaCCGGuCGCGAGGu -3'
miRNA:   3'- gCUCAC-GGCGUCGc-GGCUuGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 11093 0.66 0.814721
Target:  5'- aCGA-UGCUGCGGCGUCGAGaGaCGAAu -3'
miRNA:   3'- -GCUcACGGCGUCGCGGCUUgC-GCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.