miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 157186 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 133688 0.66 0.970538
Target:  5'- uGC-UCGcCGCgg-UCCuuGCCGCCGCG-Ca -3'
miRNA:   3'- -CGaAGC-GCGuaaAGG--UGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 39060 0.66 0.970538
Target:  5'- -gUUCGCGCGgcggUCCACCcCCggACGcCg -3'
miRNA:   3'- cgAAGCGCGUaa--AGGUGGcGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 147617 0.66 0.970538
Target:  5'- aCUUagaGCGCAgg---AUCGCCGCGUCa -3'
miRNA:   3'- cGAAg--CGCGUaaaggUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 95314 0.66 0.970538
Target:  5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3'
miRNA:   3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 38159 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 158087 0.66 0.970538
Target:  5'- -gUUCGCGCGgcggUCCACCcCCggACGcCg -3'
miRNA:   3'- cgAAGCGCGUaa--AGGUGGcGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 3214 0.66 0.969654
Target:  5'- uCUUCGCGUAg--CCACCuaggcugagacgguGCgCAUGUCc -3'
miRNA:   3'- cGAAGCGCGUaaaGGUGG--------------CG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 39178 0.66 0.967518
Target:  5'- gGCUgggCGCGCGacUCUACCGCgCAUcgcuucagaGUCu -3'
miRNA:   3'- -CGAa--GCGCGUaaAGGUGGCG-GUG---------CAG- -5'
24385 5' -53.9 NC_005264.1 + 19528 0.66 0.967518
Target:  5'- aGC-UCGgGaCGg--CCGCCGCCAaCGUUg -3'
miRNA:   3'- -CGaAGCgC-GUaaaGGUGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 114754 0.66 0.967518
Target:  5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3'
miRNA:   3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 54441 0.66 0.967205
Target:  5'- uGCUg-GCGCGggggaugcCCACCGCCGagcugguaagggcCGUCg -3'
miRNA:   3'- -CGAagCGCGUaaa-----GGUGGCGGU-------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 32985 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 39207 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 38868 0.66 0.964285
Target:  5'- aGCUccUCGCGgGUguaCACCGCCAaaggcacgaaGUCc -3'
miRNA:   3'- -CGA--AGCGCgUAaagGUGGCGGUg---------CAG- -5'
24385 5' -53.9 NC_005264.1 + 69370 0.66 0.964285
Target:  5'- cGCgugUCGCGUAUaaaUCCucuCCGCgGCGa- -3'
miRNA:   3'- -CGa--AGCGCGUAa--AGGu--GGCGgUGCag -5'
24385 5' -53.9 NC_005264.1 + 158234 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 152012 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 29786 0.66 0.961892
Target:  5'- gGCUUUGCGagccagaaacacgCgCACCGCCGCGg- -3'
miRNA:   3'- -CGAAGCGCguaaa--------G-GUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 126300 0.66 0.960833
Target:  5'- cGCUUucgggCGCGCGgccgauggcUCCugCGCCcgccuCGUCg -3'
miRNA:   3'- -CGAA-----GCGCGUaa-------AGGugGCGGu----GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.