miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 162583 0.66 0.833027
Target:  5'- uGGGcuucuGCcGCGUCCAgcgcCGCCGCACAa- -3'
miRNA:   3'- gCCUu----CGaCGCGGGU----GCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 158435 0.67 0.789819
Target:  5'- aGGggGCacUGCGCUgcucaGCGCCGgagACAUCg -3'
miRNA:   3'- gCCuuCG--ACGCGGg----UGCGGUg--UGUAG- -5'
24386 3' -58 NC_005264.1 + 158059 0.69 0.674056
Target:  5'- uGGAGG-UGCGCgaaCgGCGCCGCGCAg- -3'
miRNA:   3'- gCCUUCgACGCG---GgUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 156513 0.71 0.523761
Target:  5'- -cGAGGaCUGCGUgUACGCCACGCGa- -3'
miRNA:   3'- gcCUUC-GACGCGgGUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 154407 0.71 0.523761
Target:  5'- ---cAGUUGCGCCgGCGCCAUguucugGCAUCa -3'
miRNA:   3'- gccuUCGACGCGGgUGCGGUG------UGUAG- -5'
24386 3' -58 NC_005264.1 + 154115 0.7 0.613402
Target:  5'- gGGggGCgagccgaaacgGCGgCCACGCgCGCGCAg- -3'
miRNA:   3'- gCCuuCGa----------CGCgGGUGCG-GUGUGUag -5'
24386 3' -58 NC_005264.1 + 152726 0.68 0.713926
Target:  5'- uGGGAGUUGCcUCCACGUCACGgAc- -3'
miRNA:   3'- gCCUUCGACGcGGGUGCGGUGUgUag -5'
24386 3' -58 NC_005264.1 + 152281 0.66 0.819641
Target:  5'- aGGAAGCagcgGCgaacgcgcgauccgcGCCCcugagggcgGCGCCGCACAg- -3'
miRNA:   3'- gCCUUCGa---CG---------------CGGG---------UGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 151772 0.66 0.833027
Target:  5'- aGGggGCggcaccCGCCUACGUCACuu-UCg -3'
miRNA:   3'- gCCuuCGac----GCGGGUGCGGUGuguAG- -5'
24386 3' -58 NC_005264.1 + 150808 0.68 0.720807
Target:  5'- gCGGgcGCUuCGCCUAagggcggcggucgcCGCCGCAgGUCg -3'
miRNA:   3'- -GCCuuCGAcGCGGGU--------------GCGGUGUgUAG- -5'
24386 3' -58 NC_005264.1 + 147249 0.73 0.428051
Target:  5'- cCGGAgccgcAGCUGCGCCCGCaagcuuggccacgaGCUGCACGc- -3'
miRNA:   3'- -GCCU-----UCGACGCGGGUG--------------CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 147081 0.68 0.743143
Target:  5'- cCGG-AGCcaCGCUCGCGCgCACACAUa -3'
miRNA:   3'- -GCCuUCGacGCGGGUGCG-GUGUGUAg -5'
24386 3' -58 NC_005264.1 + 142865 0.66 0.824712
Target:  5'- uCGGuuuGUUGCGUcgacUCGCGCCGCGCcuuUCu -3'
miRNA:   3'- -GCCuu-CGACGCG----GGUGCGGUGUGu--AG- -5'
24386 3' -58 NC_005264.1 + 142695 0.74 0.396257
Target:  5'- uGGGcgccGGCgGCGCgCCACGCCugccCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGUGCGGu---GUGUAG- -5'
24386 3' -58 NC_005264.1 + 141341 0.69 0.653885
Target:  5'- gCGacGGCgGUGCCCACGUCACAUAc- -3'
miRNA:   3'- -GCcuUCGaCGCGGGUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 139170 0.66 0.833027
Target:  5'- aGGAgAGCauagaagGCGCCCAuacCGCCAUGCcgGUCc -3'
miRNA:   3'- gCCU-UCGa------CGCGGGU---GCGGUGUG--UAG- -5'
24386 3' -58 NC_005264.1 + 138746 0.69 0.684095
Target:  5'- aCGu--GCUGUGCCCAUGgCACGCuguUCg -3'
miRNA:   3'- -GCcuuCGACGCGGGUGCgGUGUGu--AG- -5'
24386 3' -58 NC_005264.1 + 137134 0.68 0.719827
Target:  5'- ----cGCUGcCGCCCGCGCCAaagauggucucaaACAUCc -3'
miRNA:   3'- gccuuCGAC-GCGGGUGCGGUg------------UGUAG- -5'
24386 3' -58 NC_005264.1 + 136458 0.68 0.71294
Target:  5'- -uGAGGCcGCGCUCagagacgGCGCCGCGCAg- -3'
miRNA:   3'- gcCUUCGaCGCGGG-------UGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 136192 0.68 0.713926
Target:  5'- ---uAGCgcgGCGCCgGCGCCGCGCu-- -3'
miRNA:   3'- gccuUCGa--CGCGGgUGCGGUGUGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.