miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 3' -53.2 NC_005264.1 + 33385 0.66 0.982818
Target:  5'- gGUAGCGCuuuggcgaugGCGACCGCgGUGAug-UUGGg -3'
miRNA:   3'- -CAUUGCG----------CGCUGGUG-CGCUccaAACC- -5'
24389 3' -53.2 NC_005264.1 + 3399 0.66 0.982818
Target:  5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3'
miRNA:   3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 122426 0.66 0.982818
Target:  5'- -gAACGCGgGGUCgguGCGCGGGGgagGGa -3'
miRNA:   3'- caUUGCGCgCUGG---UGCGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 87366 0.66 0.980783
Target:  5'- -cAACGCGCGAcuggccaccCCAgGCGGacUUUGGg -3'
miRNA:   3'- caUUGCGCGCU---------GGUgCGCUccAAACC- -5'
24389 3' -53.2 NC_005264.1 + 64529 0.66 0.980783
Target:  5'- ---cCGCGCcGCCGCG-GAGGg--GGg -3'
miRNA:   3'- cauuGCGCGcUGGUGCgCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 129495 0.66 0.980783
Target:  5'- -----uUGCGGCgGCGCaGGGUUUGGc -3'
miRNA:   3'- cauugcGCGCUGgUGCGcUCCAAACC- -5'
24389 3' -53.2 NC_005264.1 + 6488 0.66 0.976179
Target:  5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3'
miRNA:   3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 121454 0.66 0.976179
Target:  5'- -cAGCGCGCGGCCuACGCguacauuagaGAGGc---- -3'
miRNA:   3'- caUUGCGCGCUGG-UGCG----------CUCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 113517 0.66 0.976179
Target:  5'- -gAGCGCGaacaGCCGCGgGAGGUccUUGu -3'
miRNA:   3'- caUUGCGCgc--UGGUGCgCUCCA--AACc -5'
24389 3' -53.2 NC_005264.1 + 98219 0.66 0.976179
Target:  5'- -cAACgGCGUcgGGCCGCGCugcggaGAGGUUaUGGg -3'
miRNA:   3'- caUUG-CGCG--CUGGUGCG------CUCCAA-ACC- -5'
24389 3' -53.2 NC_005264.1 + 125515 0.66 0.976179
Target:  5'- ---gUGCGCGGCCAU-CGAGGgccGGu -3'
miRNA:   3'- cauuGCGCGCUGGUGcGCUCCaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 52208 0.66 0.973595
Target:  5'- cGUGGgGCGCGGugGCGCGAGc--UGGu -3'
miRNA:   3'- -CAUUgCGCGCUggUGCGCUCcaaACC- -5'
24389 3' -53.2 NC_005264.1 + 87653 0.66 0.973595
Target:  5'- -gGGCGCGgGACCugGCGGcaacgGGc -3'
miRNA:   3'- caUUGCGCgCUGGugCGCUccaaaCC- -5'
24389 3' -53.2 NC_005264.1 + 147782 0.66 0.973595
Target:  5'- cGUGGacCGCGCGaACUGCGCGAcggaGGUgaGGu -3'
miRNA:   3'- -CAUU--GCGCGC-UGGUGCGCU----CCAaaCC- -5'
24389 3' -53.2 NC_005264.1 + 51808 0.66 0.973595
Target:  5'- ---cCGCGCGAgCCAcCGCuucgaaccaggaGAGGggUGGg -3'
miRNA:   3'- cauuGCGCGCU-GGU-GCG------------CUCCaaACC- -5'
24389 3' -53.2 NC_005264.1 + 104697 0.66 0.973326
Target:  5'- aUAACGUGacggagcaccagaCGGCUGCGCGAGGUc--- -3'
miRNA:   3'- cAUUGCGC-------------GCUGGUGCGCUCCAaacc -5'
24389 3' -53.2 NC_005264.1 + 74238 0.67 0.970814
Target:  5'- cGUAGCGCGCuGGCCGCGCuccagacacGGcGGUagaggcgGGg -3'
miRNA:   3'- -CAUUGCGCG-CUGGUGCG---------CU-CCAaa-----CC- -5'
24389 3' -53.2 NC_005264.1 + 35473 0.67 0.96783
Target:  5'- cUGACGCgagagugccGCGGCCGauCGCGAcGGcUUGGu -3'
miRNA:   3'- cAUUGCG---------CGCUGGU--GCGCU-CCaAACC- -5'
24389 3' -53.2 NC_005264.1 + 78596 0.67 0.96783
Target:  5'- -cAGCGCGUGuCCACGCGguAGGc---- -3'
miRNA:   3'- caUUGCGCGCuGGUGCGC--UCCaaacc -5'
24389 3' -53.2 NC_005264.1 + 37564 0.67 0.96783
Target:  5'- -cAGCGCGCcGCCGCG-GAGGg---- -3'
miRNA:   3'- caUUGCGCGcUGGUGCgCUCCaaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.