miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24389 5' -52.5 NC_005264.1 + 10502 0.66 0.985042
Target:  5'- uCCCcGAuuGCCUGAgcGUCGACGACGu -3'
miRNA:   3'- uGGGuCUu-UGGAUUacCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 743 0.66 0.985042
Target:  5'- uCCUAGcAGCUUAAUGGUCuuCGGCGg -3'
miRNA:   3'- uGGGUCuUUGGAUUACCGGcuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 33190 0.66 0.984862
Target:  5'- aACgCAGAGcuauuacGCUUAA-GGCUGGCGGCGc -3'
miRNA:   3'- -UGgGUCUU-------UGGAUUaCCGGCUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 54167 0.66 0.983171
Target:  5'- gUgCGGAAACCgcgcccUGGCCgggaGACGACAc -3'
miRNA:   3'- uGgGUCUUUGGauu---ACCGG----CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 144259 0.66 0.983171
Target:  5'- gGCCUGGcucgcuGCCUug-GGCCGGCGGa- -3'
miRNA:   3'- -UGGGUCuu----UGGAuuaCCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 2988 0.66 0.983171
Target:  5'- aAUCCAucGAGcGCCgacugGGCCGGCGGCu -3'
miRNA:   3'- -UGGGU--CUU-UGGauua-CCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 62362 0.66 0.983171
Target:  5'- cUCCAG-GGCCc--UGGCCGccGCGACAg -3'
miRNA:   3'- uGGGUCuUUGGauuACCGGC--UGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 30391 0.66 0.983171
Target:  5'- uUCCAGAAagGCCUugacGCCGGCGAg- -3'
miRNA:   3'- uGGGUCUU--UGGAuuacCGGCUGCUgu -5'
24389 5' -52.5 NC_005264.1 + 89061 0.66 0.981128
Target:  5'- gACgCCAGGAACUcGGUGGCgGACa--- -3'
miRNA:   3'- -UG-GGUCUUUGGaUUACCGgCUGcugu -5'
24389 5' -52.5 NC_005264.1 + 80221 0.66 0.981128
Target:  5'- -gUgAGAAGCUUG--GGCCGugGACGg -3'
miRNA:   3'- ugGgUCUUUGGAUuaCCGGCugCUGU- -5'
24389 5' -52.5 NC_005264.1 + 50239 0.66 0.978905
Target:  5'- uCCCGGuAGCCUGuuugGUGGCCucuGGgGACGc -3'
miRNA:   3'- uGGGUCuUUGGAU----UACCGG---CUgCUGU- -5'
24389 5' -52.5 NC_005264.1 + 11879 0.66 0.976494
Target:  5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3'
miRNA:   3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 130905 0.66 0.976494
Target:  5'- aGCUCAGAgccgAGCCgcgagGGCCGugGGa- -3'
miRNA:   3'- -UGGGUCU----UUGGauua-CCGGCugCUgu -5'
24389 5' -52.5 NC_005264.1 + 147552 0.66 0.976494
Target:  5'- uCCCGcGgcGCgaAGUGGCCGcCGACGu -3'
miRNA:   3'- uGGGU-CuuUGgaUUACCGGCuGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 2367 0.66 0.976494
Target:  5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3'
miRNA:   3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5'
24389 5' -52.5 NC_005264.1 + 121394 0.66 0.976494
Target:  5'- aACCCuGgcACCgAGUGGCCGuCGcccGCAg -3'
miRNA:   3'- -UGGGuCuuUGGaUUACCGGCuGC---UGU- -5'
24389 5' -52.5 NC_005264.1 + 46058 0.67 0.973887
Target:  5'- cCCCGGAAGCCauucuGUGGUauaaaagcggGACGGCGg -3'
miRNA:   3'- uGGGUCUUUGGau---UACCGg---------CUGCUGU- -5'
24389 5' -52.5 NC_005264.1 + 72269 0.67 0.973887
Target:  5'- cGCUgCAGAGGCgUAcUGGCCGGCaACGa -3'
miRNA:   3'- -UGG-GUCUUUGgAUuACCGGCUGcUGU- -5'
24389 5' -52.5 NC_005264.1 + 90654 0.67 0.971076
Target:  5'- cGCgCGGAGACCgcAUuGCUGGCGGCu -3'
miRNA:   3'- -UGgGUCUUUGGauUAcCGGCUGCUGu -5'
24389 5' -52.5 NC_005264.1 + 113246 0.67 0.971076
Target:  5'- cCCCGucguCCUGGUcGCCGGCGGCGu -3'
miRNA:   3'- uGGGUcuuuGGAUUAcCGGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.