miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 5' -55.5 NC_005264.1 + 6834 0.66 0.935054
Target:  5'- cGUCGCCGggcguACCUuGCUgguuGCCGGGAACUa -3'
miRNA:   3'- -CAGCGGU-----UGGGcUGG----UGGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 100598 0.66 0.935054
Target:  5'- cGUCGCCAAggauaCCGACgACCccgAAGcGGCCg -3'
miRNA:   3'- -CAGCGGUUg----GGCUGgUGG---UUC-UUGGa -5'
24392 5' -55.5 NC_005264.1 + 134939 0.66 0.935054
Target:  5'- cGUCGCUcACCC--UCGCCGAGAcgcugGCCa -3'
miRNA:   3'- -CAGCGGuUGGGcuGGUGGUUCU-----UGGa -5'
24392 5' -55.5 NC_005264.1 + 2964 0.66 0.935054
Target:  5'- cUCGCCGGCauaguuCCGACCACgaauccauCGAGcGCCg -3'
miRNA:   3'- cAGCGGUUG------GGCUGGUG--------GUUCuUGGa -5'
24392 5' -55.5 NC_005264.1 + 135550 0.66 0.935054
Target:  5'- uUCGCguACCUGGCUcuagacacguggGCCAacAGGGCCUc -3'
miRNA:   3'- cAGCGguUGGGCUGG------------UGGU--UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 104821 0.66 0.934558
Target:  5'- -gCGCCGcacgacgGCCUGuCCGCCGGG-GCCg -3'
miRNA:   3'- caGCGGU-------UGGGCuGGUGGUUCuUGGa -5'
24392 5' -55.5 NC_005264.1 + 64910 0.66 0.934558
Target:  5'- -gCGCCAGCCCGcAUUcgauguggaagaaAgCGAGAGCCUu -3'
miRNA:   3'- caGCGGUUGGGC-UGG-------------UgGUUCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 112550 0.66 0.93356
Target:  5'- -cCGCCGACCUGuuaGCCGCUAcgcacgagcaacucGGAAUCg -3'
miRNA:   3'- caGCGGUUGGGC---UGGUGGU--------------UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 121413 0.66 0.929991
Target:  5'- cGUCGCCcgcaggAGCCCGGC-GCCGGccuGCCUa -3'
miRNA:   3'- -CAGCGG------UUGGGCUGgUGGUUcu-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 51066 0.66 0.929991
Target:  5'- cGUCGCCu-CuaGGCCGCCuAG-ACCUg -3'
miRNA:   3'- -CAGCGGuuGggCUGGUGGuUCuUGGA- -5'
24392 5' -55.5 NC_005264.1 + 107383 0.66 0.929991
Target:  5'- cUCGCCGACgaugaggacgaaUCGACCACCca-AGCCa -3'
miRNA:   3'- cAGCGGUUG------------GGCUGGUGGuucUUGGa -5'
24392 5' -55.5 NC_005264.1 + 27525 0.66 0.929991
Target:  5'- gGUCGCCGuaACCCucaguccgugGugCAuCCGAGGAUCg -3'
miRNA:   3'- -CAGCGGU--UGGG----------CugGU-GGUUCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 2386 0.66 0.929991
Target:  5'- cGUCGCCcgcaggAGCCCGGC-GCCGGccuGCCUa -3'
miRNA:   3'- -CAGCGG------UUGGGCUGgUGGUUcu-UGGA- -5'
24392 5' -55.5 NC_005264.1 + 104579 0.66 0.924689
Target:  5'- -gCGCCAugCCGcCCACgGGaucGGGCCg -3'
miRNA:   3'- caGCGGUugGGCuGGUGgUU---CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 116753 0.66 0.924689
Target:  5'- gGUUGcCCAACCgUGACUacGCCGGGAACa- -3'
miRNA:   3'- -CAGC-GGUUGG-GCUGG--UGGUUCUUGga -5'
24392 5' -55.5 NC_005264.1 + 115567 0.66 0.919147
Target:  5'- -aCGCCAgguccaACCUGACUAUCGauccggaggaguGGGGCCUg -3'
miRNA:   3'- caGCGGU------UGGGCUGGUGGU------------UCUUGGA- -5'
24392 5' -55.5 NC_005264.1 + 26263 0.66 0.919147
Target:  5'- cUCuaCGACCCGcucuucgacGCCACCGAGGaagacGCCg -3'
miRNA:   3'- cAGcgGUUGGGC---------UGGUGGUUCU-----UGGa -5'
24392 5' -55.5 NC_005264.1 + 138437 0.66 0.919147
Target:  5'- cGUCGCgCuGCUCGcgaucuaccucGCCGCCGggGGAGCCg -3'
miRNA:   3'- -CAGCG-GuUGGGC-----------UGGUGGU--UCUUGGa -5'
24392 5' -55.5 NC_005264.1 + 156019 0.66 0.917438
Target:  5'- aGUCGCCGccgccuccggcaacACCCuGACCGuCCccucuGAGCCg -3'
miRNA:   3'- -CAGCGGU--------------UGGG-CUGGU-GGuu---CUUGGa -5'
24392 5' -55.5 NC_005264.1 + 36992 0.66 0.917438
Target:  5'- aGUCGCCGccgccuccggcaacACCCuGACCGuCCccucuGAGCCg -3'
miRNA:   3'- -CAGCGGU--------------UGGG-CUGGU-GGuu---CUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.