miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 5' -55.1 NC_005264.1 + 72513 0.66 0.945323
Target:  5'- -uGCGCCGAGAGgcGCgUG--GCGCUu -3'
miRNA:   3'- cuCGCGGCUCUCgaUGgACuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 54258 0.66 0.945323
Target:  5'- aGAGCGCCGcagGGAGC-GCUU----CGCCa -3'
miRNA:   3'- -CUCGCGGC---UCUCGaUGGAcuuuGCGG- -5'
24404 5' -55.1 NC_005264.1 + 43325 0.66 0.945323
Target:  5'- --uCG-CGAGGGCUGCCgccucgGAGcACGCCc -3'
miRNA:   3'- cucGCgGCUCUCGAUGGa-----CUU-UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 117283 0.66 0.940764
Target:  5'- -cGCGCCGAcacGGGCgaagaUGCCagGAAcauacagaGCGCCa -3'
miRNA:   3'- cuCGCGGCU---CUCG-----AUGGa-CUU--------UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 160193 0.66 0.940764
Target:  5'- aGAGCuGCCGcugcAGAGCgcaACCUGcc-CGCUg -3'
miRNA:   3'- -CUCG-CGGC----UCUCGa--UGGACuuuGCGG- -5'
24404 5' -55.1 NC_005264.1 + 53507 0.66 0.940764
Target:  5'- -uGCGCCGGGAGgUaguGCUUGuccaugauGAACGCa -3'
miRNA:   3'- cuCGCGGCUCUCgA---UGGAC--------UUUGCGg -5'
24404 5' -55.1 NC_005264.1 + 6677 0.66 0.940764
Target:  5'- uGGCGCC-AGcAGCgagGCC-GAGACgGCCg -3'
miRNA:   3'- cUCGCGGcUC-UCGa--UGGaCUUUG-CGG- -5'
24404 5' -55.1 NC_005264.1 + 125704 0.66 0.940764
Target:  5'- uGGCGCC-AGcAGCgagGCC-GAGACgGCCg -3'
miRNA:   3'- cUCGCGGcUC-UCGa--UGGaCUUUG-CGG- -5'
24404 5' -55.1 NC_005264.1 + 95106 0.66 0.935968
Target:  5'- --uCGCUGAGAGCcuuUGCCccGAAGcCGCCc -3'
miRNA:   3'- cucGCGGCUCUCG---AUGGa-CUUU-GCGG- -5'
24404 5' -55.1 NC_005264.1 + 89614 0.66 0.935968
Target:  5'- cGGCGUaCGAGGuuaagaucacGCUGCCUGGgaacuuGACGCg -3'
miRNA:   3'- cUCGCG-GCUCU----------CGAUGGACU------UUGCGg -5'
24404 5' -55.1 NC_005264.1 + 31119 0.66 0.935968
Target:  5'- uAGCGCCacGAGC-GCCaGcAACGCCg -3'
miRNA:   3'- cUCGCGGcuCUCGaUGGaCuUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 3860 0.66 0.935968
Target:  5'- -uGCGCCGGGgauugGGCUGCCcc--ACGUCu -3'
miRNA:   3'- cuCGCGGCUC-----UCGAUGGacuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 5245 0.66 0.93093
Target:  5'- aGGaCGCCcugcuGGGCUACgggGAAGCGCCc -3'
miRNA:   3'- cUC-GCGGcu---CUCGAUGga-CUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 91050 0.66 0.93093
Target:  5'- cGAGCgagaaGCCGAGGcGCU-UCUGcaacGGCGCCa -3'
miRNA:   3'- -CUCG-----CGGCUCU-CGAuGGACu---UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 48394 0.66 0.93093
Target:  5'- gGGGCGUCGGGcGGCgGCCaGGAGCGg- -3'
miRNA:   3'- -CUCGCGGCUC-UCGaUGGaCUUUGCgg -5'
24404 5' -55.1 NC_005264.1 + 69260 0.66 0.93093
Target:  5'- -cGCGCCucauccGCUGCCaUGggGCGCg -3'
miRNA:   3'- cuCGCGGcucu--CGAUGG-ACuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 18529 0.66 0.929894
Target:  5'- gGGGCGCCGucuccc-CCUGAGggcGCGCCg -3'
miRNA:   3'- -CUCGCGGCucucgauGGACUU---UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 24671 0.66 0.925653
Target:  5'- aGGCagGCCGGaAGCcGCCaccucgGAAACGCCg -3'
miRNA:   3'- cUCG--CGGCUcUCGaUGGa-----CUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 75104 0.66 0.925653
Target:  5'- aGGCGCCG-GcGCcgAgCUGggGCGCa -3'
miRNA:   3'- cUCGCGGCuCuCGa-UgGACuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 35986 0.66 0.925653
Target:  5'- gGGGCGCgGAGAGC-----GAAACGCg -3'
miRNA:   3'- -CUCGCGgCUCUCGauggaCUUUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.