miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 121642 0.66 0.977027
Target:  5'- ---gCGCGAGccGAGCaGGCGGGGCg-- -3'
miRNA:   3'- aaaaGCGCUC--UUCGcUCGUCUCGacg -5'
24409 3' -52.7 NC_005264.1 + 96328 0.66 0.977027
Target:  5'- ---gCGCGA-AAGCGAGCucgucGAGC-GCg -3'
miRNA:   3'- aaaaGCGCUcUUCGCUCGu----CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 3613 0.66 0.977027
Target:  5'- ---cCGCGGGggGCcgcgaGGGCGGGcgcGCUGa -3'
miRNA:   3'- aaaaGCGCUCuuCG-----CUCGUCU---CGACg -5'
24409 3' -52.7 NC_005264.1 + 122640 0.66 0.977027
Target:  5'- ---cCGCGGGggGCcgcgaGGGCGGGcgcGCUGa -3'
miRNA:   3'- aaaaGCGCUCuuCG-----CUCGUCU---CGACg -5'
24409 3' -52.7 NC_005264.1 + 2615 0.66 0.977027
Target:  5'- ---gCGCGAGccGAGCaGGCGGGGCg-- -3'
miRNA:   3'- aaaaGCGCUC--UUCGcUCGUCUCGacg -5'
24409 3' -52.7 NC_005264.1 + 52851 0.66 0.976269
Target:  5'- ---aCGCGGGAgcugcgcgcauAcgacgugcacacgcGCGAGCgaGGGGCUGCg -3'
miRNA:   3'- aaaaGCGCUCU-----------U--------------CGCUCG--UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 130899 0.66 0.974428
Target:  5'- --cUCGCGAGcucaGAGCcGAGCcGCg -3'
miRNA:   3'- aaaAGCGCUCuucgCUCGuCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 125371 0.66 0.974428
Target:  5'- ---gUGCGAuacGCGGGacaGGGGCUGCa -3'
miRNA:   3'- aaaaGCGCUcuuCGCUCg--UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 48674 0.66 0.974428
Target:  5'- ----gGCGAGGAGaucuGGGCGcGAGuCUGCu -3'
miRNA:   3'- aaaagCGCUCUUCg---CUCGU-CUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 115672 0.66 0.974428
Target:  5'- ---cCGuCGAGGAGgcguucaacaCGAGCAuAGCUGCc -3'
miRNA:   3'- aaaaGC-GCUCUUC----------GCUCGUcUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 6344 0.66 0.974428
Target:  5'- ---gUGCGAuacGCGGGacaGGGGCUGCa -3'
miRNA:   3'- aaaaGCGCUcuuCGCUCg--UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 39221 0.66 0.974428
Target:  5'- ---cCGCGGcgcuGGCGGGgAGGGcCUGCg -3'
miRNA:   3'- aaaaGCGCUcu--UCGCUCgUCUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 11873 0.66 0.974428
Target:  5'- --cUCGCGAGcucaGAGCcGAGCcGCg -3'
miRNA:   3'- aaaAGCGCUCuucgCUCGuCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 158248 0.66 0.974428
Target:  5'- ---cCGCGGcgcuGGCGGGgAGGGcCUGCg -3'
miRNA:   3'- aaaaGCGCUcu--UCGCUCgUCUC-GACG- -5'
24409 3' -52.7 NC_005264.1 + 49842 0.66 0.97162
Target:  5'- ---gCGCGAGcAcguacgccgcAGCcuucuGGCGGAGCUGCu -3'
miRNA:   3'- aaaaGCGCUC-U----------UCGc----UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 123306 0.66 0.97162
Target:  5'- ---cCGCGGGGcGGCG-GCAGAGa-GCa -3'
miRNA:   3'- aaaaGCGCUCU-UCGCuCGUCUCgaCG- -5'
24409 3' -52.7 NC_005264.1 + 124424 0.66 0.97162
Target:  5'- --cUUGCcAGggGCcAGCAGGGCguacGCg -3'
miRNA:   3'- aaaAGCGcUCuuCGcUCGUCUCGa---CG- -5'
24409 3' -52.7 NC_005264.1 + 125529 0.66 0.97162
Target:  5'- --gUCGaGAGAAgGCGGGUGuuGCUGCg -3'
miRNA:   3'- aaaAGCgCUCUU-CGCUCGUcuCGACG- -5'
24409 3' -52.7 NC_005264.1 + 120961 0.66 0.97162
Target:  5'- ---aUGCGuGAaaaaccAGCGcGCGGAGCUGg -3'
miRNA:   3'- aaaaGCGCuCU------UCGCuCGUCUCGACg -5'
24409 3' -52.7 NC_005264.1 + 56218 0.66 0.97162
Target:  5'- --gUCGuCGAGAucacuGGCGAGCGucGCgcgGCu -3'
miRNA:   3'- aaaAGC-GCUCU-----UCGCUCGUcuCGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.