miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 160415 0.67 0.80695
Target:  5'- --cGGACG-UGUCCGCgGCCUCcGCu -3'
miRNA:   3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5'
24409 5' -58.6 NC_005264.1 + 159333 0.67 0.771557
Target:  5'- aGGcGGACGGcgaggauccccUGCCCcCCGCCgcgugCGGCGg -3'
miRNA:   3'- -CCuCCUGCU-----------ACGGGcGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 159282 0.68 0.703493
Target:  5'- cGGAGGAaguggcacgagaGAUGCUggaCGCCGCCgcgucgcgguUCGACGa -3'
miRNA:   3'- -CCUCCUg-----------CUACGG---GCGGUGG----------AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 158397 0.66 0.823783
Target:  5'- gGGAGc-CGuauAUGCCCGCCGCC-CGuCAc -3'
miRNA:   3'- -CCUCcuGC---UACGGGCGGUGGaGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 157771 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 156148 0.67 0.798306
Target:  5'- cGAGGGCGA-GgCgGCCGUCUCGGCc -3'
miRNA:   3'- cCUCCUGCUaCgGgCGGUGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 153160 0.68 0.743755
Target:  5'- cGAGGcGCGA-GCCCGCCucccccaagGCCUCgcuaGACGa -3'
miRNA:   3'- cCUCC-UGCUaCGGGCGG---------UGGAG----CUGU- -5'
24409 5' -58.6 NC_005264.1 + 149935 0.68 0.715126
Target:  5'- gGGAGGacuGCGAgGCCgGgCGgCUCGACGg -3'
miRNA:   3'- -CCUCC---UGCUaCGGgCgGUgGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 148204 0.69 0.676058
Target:  5'- cGAGGGaauUGAgGCUCGCCugCUCGAgAg -3'
miRNA:   3'- cCUCCU---GCUaCGGGCGGugGAGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 146263 0.66 0.831958
Target:  5'- cGGAGucauGUGCgCCGCCGCCcCGGCGc -3'
miRNA:   3'- -CCUCcugcUACG-GGCGGUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 145675 0.66 0.818799
Target:  5'- uGGAcGACGAgcucucggauuauccUGUagCCGCCcCCUCGACGc -3'
miRNA:   3'- -CCUcCUGCU---------------ACG--GGCGGuGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 144253 0.68 0.743755
Target:  5'- cGAGGugGccugGCUCGCUGCCUUGGg- -3'
miRNA:   3'- cCUCCugCua--CGGGCGGUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 143989 0.67 0.771557
Target:  5'- -uAGGGgGGUG-CCGCCcCCUCGAUg -3'
miRNA:   3'- ccUCCUgCUACgGGCGGuGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 142332 0.66 0.831148
Target:  5'- -cAGaGACGucuacgaAUGCaCCGCUACCUUGGCGu -3'
miRNA:   3'- ccUC-CUGC-------UACG-GGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 139998 0.7 0.586908
Target:  5'- gGGAGGACGAcguUGCUguaccccucuCGCUACCUacacgcucgCGACAg -3'
miRNA:   3'- -CCUCCUGCU---ACGG----------GCGGUGGA---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 139505 0.68 0.738088
Target:  5'- cGGGGcagaccccgcuggccGCGAUguugugGCCCGCCGCaCUCGugGc -3'
miRNA:   3'- cCUCC---------------UGCUA------CGGGCGGUG-GAGCugU- -5'
24409 5' -58.6 NC_005264.1 + 131990 0.71 0.538129
Target:  5'- --cGGGCGgcGCgCCGCCGCCgaCGACGa -3'
miRNA:   3'- ccuCCUGCuaCG-GGCGGUGGa-GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131653 0.72 0.490815
Target:  5'- cGGucuGCGGUGCCCGCCGCCagaccguuggCGGCAc -3'
miRNA:   3'- -CCuccUGCUACGGGCGGUGGa---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131233 0.83 0.121969
Target:  5'- -cAGGGCGAUGCgCGCCGCCUCGcCAg -3'
miRNA:   3'- ccUCCUGCUACGgGCGGUGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 128711 0.72 0.500132
Target:  5'- gGGAGG-CGG-GCUCG-CGCCUCGACGc -3'
miRNA:   3'- -CCUCCuGCUaCGGGCgGUGGAGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.