miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 116426 0.66 0.980123
Target:  5'- aGGuCGCUGggGgcGuCUGGCCGCggggGCg -3'
miRNA:   3'- gCU-GCGACuaCuaC-GAUCGGCGa---UGg -5'
24414 5' -53.1 NC_005264.1 + 105528 0.66 0.980123
Target:  5'- uCGAUGCgGAUgcGAUcGCUGaguGCCGCUAgCu -3'
miRNA:   3'- -GCUGCGaCUA--CUA-CGAU---CGGCGAUgG- -5'
24414 5' -53.1 NC_005264.1 + 84950 0.66 0.980123
Target:  5'- uGGCGCcg--GGUGCUcgcuugcggccaGGCUGCUGCg -3'
miRNA:   3'- gCUGCGacuaCUACGA------------UCGGCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 66448 0.66 0.980123
Target:  5'- gGGCGCUuccGAUGGggagaugGCaccGCCGCgGCCa -3'
miRNA:   3'- gCUGCGA---CUACUa------CGau-CGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 31895 0.66 0.977832
Target:  5'- uCGAUGCUGAcGuUGCgaaGGUaaGCUACCg -3'
miRNA:   3'- -GCUGCGACUaCuACGa--UCGg-CGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 112566 0.66 0.977832
Target:  5'- gGGCGUUGGUGAU-CU--CCGCgGCCa -3'
miRNA:   3'- gCUGCGACUACUAcGAucGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 90651 0.66 0.977832
Target:  5'- gGGCGCgcgGA-GAccgcauUGCUGGCgGCUAUg -3'
miRNA:   3'- gCUGCGa--CUaCU------ACGAUCGgCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 85624 0.66 0.975351
Target:  5'- cCGAUGCcGuUGcUGC-AGCCGCUaaugGCCg -3'
miRNA:   3'- -GCUGCGaCuACuACGaUCGGCGA----UGG- -5'
24414 5' -53.1 NC_005264.1 + 155677 0.66 0.972674
Target:  5'- cCGACccguGCggGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GCUG----CGa-CUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 133163 0.66 0.972674
Target:  5'- aCGAgGCUGGacgcucccUGAUGCUAcGCaaCGCggcggACCg -3'
miRNA:   3'- -GCUgCGACU--------ACUACGAU-CG--GCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 25613 0.66 0.969793
Target:  5'- cCGGCGUUGcgGAacacggcgGCgguggGGCCGCgcuCCg -3'
miRNA:   3'- -GCUGCGACuaCUa-------CGa----UCGGCGau-GG- -5'
24414 5' -53.1 NC_005264.1 + 78739 0.67 0.966701
Target:  5'- uCGGCGgUGAUuugccaucaGAUGCgc-CCGCUGCUc -3'
miRNA:   3'- -GCUGCgACUA---------CUACGaucGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 92594 0.67 0.966701
Target:  5'- cCGACGCgggcagguuUGAUGc-GCUGGCC-CUGCa -3'
miRNA:   3'- -GCUGCG---------ACUACuaCGAUCGGcGAUGg -5'
24414 5' -53.1 NC_005264.1 + 93778 0.67 0.966701
Target:  5'- gCGACGaC-GAUGAccUGCccggcGGCCGCgGCCa -3'
miRNA:   3'- -GCUGC-GaCUACU--ACGa----UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 132371 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 13344 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 116553 0.67 0.95986
Target:  5'- aGACGCcgGAUGA-GCgAGCUGCgGCg -3'
miRNA:   3'- gCUGCGa-CUACUaCGaUCGGCGaUGg -5'
24414 5' -53.1 NC_005264.1 + 106693 0.67 0.9561
Target:  5'- aGACGCgcagcaaGAUGuacacaucGCUcGCCGUUACCu -3'
miRNA:   3'- gCUGCGa------CUACua------CGAuCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 48735 0.67 0.9561
Target:  5'- gCGAUGCUGAUGAaGC-GGCuCGUaACUc -3'
miRNA:   3'- -GCUGCGACUACUaCGaUCG-GCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 65731 0.67 0.9561
Target:  5'- aGAUGCUGGgacGAUGUgugguccGCCGUcgGCCg -3'
miRNA:   3'- gCUGCGACUa--CUACGau-----CGGCGa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.