miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 99907 0.66 0.825888
Target:  5'- aGGcGCGGCUUg--CGGcCGCGCaaGCCc -3'
miRNA:   3'- gUC-CGCUGAGagaGCC-GCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 9923 0.66 0.825888
Target:  5'- --cGCGACUgcgggCUUUgCGGCGCGCUgagaGCUa -3'
miRNA:   3'- gucCGCUGA-----GAGA-GCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 136764 0.66 0.825888
Target:  5'- gAGGCGAagaccagcccagUgagucCUUUCGGCGCGUg-GCCg -3'
miRNA:   3'- gUCCGCU------------Ga----GAGAGCCGCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 95355 0.66 0.825888
Target:  5'- gGGGcCGACggg--CGGCGCGUgccGCCa -3'
miRNA:   3'- gUCC-GCUGagagaGCCGCGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 34738 0.66 0.825888
Target:  5'- -uGGCG-UUCUUccCGGCGCGCcggucGCCg -3'
miRNA:   3'- guCCGCuGAGAGa-GCCGCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 46526 0.66 0.825888
Target:  5'- gCAGGCcGCUC---CGGCGCGCaagaaGCCc -3'
miRNA:   3'- -GUCCGcUGAGagaGCCGCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 98519 0.66 0.825888
Target:  5'- aCGGGgGGcCUCagUCUUGGCagcggcaacGCGCUguggGCCg -3'
miRNA:   3'- -GUCCgCU-GAG--AGAGCCG---------CGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 91030 0.66 0.825888
Target:  5'- gCGGGCGGCU---UCGGC-CGCUaUGCg -3'
miRNA:   3'- -GUCCGCUGAgagAGCCGcGCGA-ACGg -5'
24425 3' -58.8 NC_005264.1 + 49360 0.66 0.825888
Target:  5'- --cGCGGCaagaUCGGCGCGUaUUGCCu -3'
miRNA:   3'- gucCGCUGagagAGCCGCGCG-AACGG- -5'
24425 3' -58.8 NC_005264.1 + 146314 0.66 0.823398
Target:  5'- gCAaGCG-CUaagagcuauccugaCUCUCGGCGUGCgcGCCg -3'
miRNA:   3'- -GUcCGCuGA--------------GAGAGCCGCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 72687 0.66 0.817532
Target:  5'- -uGGCGGCgUUCgugacgCGGCGCaauGCUuUGCCu -3'
miRNA:   3'- guCCGCUGaGAGa-----GCCGCG---CGA-ACGG- -5'
24425 3' -58.8 NC_005264.1 + 5413 0.66 0.809016
Target:  5'- aGGGCGuacgcggcauCUgUCUCGGCGuCGCcgcucucGCCg -3'
miRNA:   3'- gUCCGCu---------GAgAGAGCCGC-GCGaa-----CGG- -5'
24425 3' -58.8 NC_005264.1 + 124440 0.66 0.809016
Target:  5'- aGGGCGuacgcggcauCUgUCUCGGCGuCGCcgcucucGCCg -3'
miRNA:   3'- gUCCGCu---------GAgAGAGCCGC-GCGaa-----CGG- -5'
24425 3' -58.8 NC_005264.1 + 61438 0.66 0.809016
Target:  5'- -cGGCGGCccgCUcCUCGGCGcCGagUUGCUc -3'
miRNA:   3'- guCCGCUGa--GA-GAGCCGC-GCg-AACGG- -5'
24425 3' -58.8 NC_005264.1 + 106075 0.66 0.809016
Target:  5'- gGGGUuucCUUgCUUGGCGUGCgUGCCa -3'
miRNA:   3'- gUCCGcu-GAGaGAGCCGCGCGaACGG- -5'
24425 3' -58.8 NC_005264.1 + 80544 0.66 0.805566
Target:  5'- -cGGCGGCauucuauauuccgUUCUCGGCggacccuucGCGCUccggUGCCg -3'
miRNA:   3'- guCCGCUGa------------GAGAGCCG---------CGCGA----ACGG- -5'
24425 3' -58.8 NC_005264.1 + 144366 0.66 0.800347
Target:  5'- uGGGCGGaguCUCUCUUGGCGaggGacgUGCUc -3'
miRNA:   3'- gUCCGCU---GAGAGAGCCGCg--Cga-ACGG- -5'
24425 3' -58.8 NC_005264.1 + 3668 0.66 0.800347
Target:  5'- gGGGCGACUggCaUUGGUGCGgg-GCCu -3'
miRNA:   3'- gUCCGCUGAgaG-AGCCGCGCgaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 36489 0.66 0.791532
Target:  5'- aAGGCGGCgUUUUCGuGCgaaGCGCgcgGCCu -3'
miRNA:   3'- gUCCGCUGaGAGAGC-CG---CGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 132433 0.66 0.791532
Target:  5'- --cGCaGCUCUCcgcacCGGCGCGCgaccGCCg -3'
miRNA:   3'- gucCGcUGAGAGa----GCCGCGCGaa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.