miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 3' -50.3 NC_005264.1 + 93220 0.66 0.997832
Target:  5'- --cCCCAAuAGCCuGUCGUucucacgccGGGcgGCGCc -3'
miRNA:   3'- cuuGGGUU-UCGG-CAGCA---------CCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 107196 0.66 0.997832
Target:  5'- uGGCCUGGAGCUGUuccggCGUauGggUACGCg -3'
miRNA:   3'- cUUGGGUUUCGGCA-----GCAc-CuuAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 73875 0.66 0.997832
Target:  5'- uGAGCUCAccGCCGUCGccGAcucuCGCa -3'
miRNA:   3'- -CUUGGGUuuCGGCAGCacCUuau-GCG- -5'
24429 3' -50.3 NC_005264.1 + 69416 0.66 0.997421
Target:  5'- -cGCCUGccGCCGUC--GGAGUAUGUa -3'
miRNA:   3'- cuUGGGUuuCGGCAGcaCCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 52685 0.66 0.997421
Target:  5'- --cCCCAAAGCCG-CGgcgGGuuu-CGCc -3'
miRNA:   3'- cuuGGGUUUCGGCaGCa--CCuuauGCG- -5'
24429 3' -50.3 NC_005264.1 + 105742 0.66 0.997285
Target:  5'- -cGCgCGAAGCaacgguauuuggccCGUCGUGGAAgccCGCc -3'
miRNA:   3'- cuUGgGUUUCG--------------GCAGCACCUUau-GCG- -5'
24429 3' -50.3 NC_005264.1 + 5031 0.66 0.996947
Target:  5'- aGGCCaCGAGGUuccgCGUCGUGG---GCGCc -3'
miRNA:   3'- cUUGG-GUUUCG----GCAGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 44891 0.66 0.996947
Target:  5'- cGGGCCCGucGUCGUCuGgggcgGGAGgagagauccgGCGCa -3'
miRNA:   3'- -CUUGGGUuuCGGCAG-Ca----CCUUa---------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 116414 0.66 0.996403
Target:  5'- uGAGCCCGcGGCagGUCGcUGGGG-GCGUc -3'
miRNA:   3'- -CUUGGGUuUCGg-CAGC-ACCUUaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 61302 0.66 0.996403
Target:  5'- cGGCCuuCAAGGCCGUCGUGuuAaaccuguucUGCGUa -3'
miRNA:   3'- cUUGG--GUUUCGGCAGCACcuU---------AUGCG- -5'
24429 3' -50.3 NC_005264.1 + 59803 0.66 0.996345
Target:  5'- -cGCCgCGGAGCCGUacguagaCGUGaGggU-CGCg -3'
miRNA:   3'- cuUGG-GUUUCGGCA-------GCAC-CuuAuGCG- -5'
24429 3' -50.3 NC_005264.1 + 83384 0.66 0.995783
Target:  5'- aAGCCCAGcuGCCGcUCGUcGucUGCGCg -3'
miRNA:   3'- cUUGGGUUu-CGGC-AGCAcCuuAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 123762 0.66 0.995783
Target:  5'- -uGCCCGccGAGCCGgCGUccgGGggUggaccgccGCGCg -3'
miRNA:   3'- cuUGGGU--UUCGGCaGCA---CCuuA--------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 16558 0.66 0.995783
Target:  5'- uGGCgCAAuAGCCGUCGUaagGGAccGCGUa -3'
miRNA:   3'- cUUGgGUU-UCGGCAGCA---CCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 4736 0.66 0.995783
Target:  5'- -uGCCCGccGAGCCGgCGUccgGGggUggaccgccGCGCg -3'
miRNA:   3'- cuUGGGU--UUCGGCaGCA---CCuuA--------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 51586 0.66 0.995783
Target:  5'- uGAACCCAAAGUCGUgaaaGaUGGuuuGUAUGg -3'
miRNA:   3'- -CUUGGGUUUCGGCAg---C-ACCu--UAUGCg -5'
24429 3' -50.3 NC_005264.1 + 31953 0.66 0.99558
Target:  5'- uGAGCUCGcgaguggcggcgacGGGCCG-CGUGuccGAUGCGCg -3'
miRNA:   3'- -CUUGGGU--------------UUCGGCaGCACc--UUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 150980 0.66 0.99558
Target:  5'- uGAGCUCGcgaguggcggcgacGGGCCG-CGUGuccGAUGCGCg -3'
miRNA:   3'- -CUUGGGU--------------UUCGGCaGCACc--UUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 148561 0.66 0.995077
Target:  5'- aGAGCCCAu-GCCuuauUUGUGGGAcacuagagACGCg -3'
miRNA:   3'- -CUUGGGUuuCGGc---AGCACCUUa-------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 128616 0.66 0.995077
Target:  5'- aAACCCGu--CCGUCuUGGGAcACGCc -3'
miRNA:   3'- cUUGGGUuucGGCAGcACCUUaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.