miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 50571 0.66 0.851021
Target:  5'- -cGCGuGCGGGAAGCGCacgCGGCGcUGa- -3'
miRNA:   3'- auCGU-CGCCUUUCGCG---GCCGCcAUac -5'
24454 5' -57.5 NC_005264.1 + 108713 0.66 0.851021
Target:  5'- cGGUGGUGGgcAGCGCCaacuccauuucaGGUGGcGUGa -3'
miRNA:   3'- aUCGUCGCCuuUCGCGG------------CCGCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 155266 0.66 0.851021
Target:  5'- cAGCGGCGcGggGuaGgCGGCGGggacgAUGa -3'
miRNA:   3'- aUCGUCGC-CuuUcgCgGCCGCCa----UAC- -5'
24454 5' -57.5 NC_005264.1 + 136238 0.66 0.842217
Target:  5'- aUAGCAGCGGcuuuAGCGCagaauuuaacaauCGGaCGGaAUGa -3'
miRNA:   3'- -AUCGUCGCCuu--UCGCG-------------GCC-GCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 57136 0.66 0.842217
Target:  5'- gGGC-GCGGAcguaggcuggucuGucuuuGCGCCGGCGGg--- -3'
miRNA:   3'- aUCGuCGCCU-------------Uu----CGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 104168 0.66 0.83484
Target:  5'- cGGguGCGccugcAGCGCCGGagaauGGUAUGu -3'
miRNA:   3'- aUCguCGCcuu--UCGCGGCCg----CCAUAC- -5'
24454 5' -57.5 NC_005264.1 + 4180 0.66 0.83484
Target:  5'- gGGUAgGUGGggGGUGCa-GCGGUAUu -3'
miRNA:   3'- aUCGU-CGCCuuUCGCGgcCGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 124318 0.66 0.829839
Target:  5'- gGGCGGCGGcugacccguggggcGGGCGaCUGGCGGg--- -3'
miRNA:   3'- aUCGUCGCCu-------------UUCGC-GGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 5291 0.66 0.829839
Target:  5'- gGGCGGCGGcugacccguggggcGGGCGaCUGGCGGg--- -3'
miRNA:   3'- aUCGUCGCCu-------------UUCGC-GGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 159835 0.66 0.826469
Target:  5'- gGGCGcUGGAugauuAGCGCCGGcCGGUc-- -3'
miRNA:   3'- aUCGUcGCCUu----UCGCGGCC-GCCAuac -5'
24454 5' -57.5 NC_005264.1 + 125464 0.66 0.826469
Target:  5'- -cGCGGCGGcgu-CGCUGGCGGa--- -3'
miRNA:   3'- auCGUCGCCuuucGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 40809 0.66 0.826469
Target:  5'- gGGCGcUGGAugauuAGCGCCGGcCGGUc-- -3'
miRNA:   3'- aUCGUcGCCUu----UCGCGGCC-GCCAuac -5'
24454 5' -57.5 NC_005264.1 + 6437 0.66 0.826469
Target:  5'- -cGCGGCGGcgu-CGCUGGCGGa--- -3'
miRNA:   3'- auCGUCGCCuuucGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 149227 0.66 0.817921
Target:  5'- -cGcCAGCGGucacuGuCGCUGGCcGGUGUGg -3'
miRNA:   3'- auC-GUCGCCuuu--C-GCGGCCG-CCAUAC- -5'
24454 5' -57.5 NC_005264.1 + 69508 0.66 0.817921
Target:  5'- -cGCGGauugcgGGGGAGUGCCGG-GGUcgGa -3'
miRNA:   3'- auCGUCg-----CCUUUCGCGGCCgCCAuaC- -5'
24454 5' -57.5 NC_005264.1 + 93585 0.66 0.817921
Target:  5'- aUGGCAGCGGAugAGGCGC--GCGaGUAc- -3'
miRNA:   3'- -AUCGUCGCCU--UUCGCGgcCGC-CAUac -5'
24454 5' -57.5 NC_005264.1 + 43214 0.66 0.817921
Target:  5'- gGGgGGgGGggGGCuaCGGCGGg--- -3'
miRNA:   3'- aUCgUCgCCuuUCGcgGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 43627 0.66 0.817921
Target:  5'- aGGCu-CGGAAGcGCGCCGGCgaggucguaGGUGUa -3'
miRNA:   3'- aUCGucGCCUUU-CGCGGCCG---------CCAUAc -5'
24454 5' -57.5 NC_005264.1 + 162241 0.66 0.817921
Target:  5'- gGGgGGgGGggGGCuaCGGCGGg--- -3'
miRNA:   3'- aUCgUCgCCuuUCGcgGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 154804 0.66 0.817057
Target:  5'- aAGaGGCGGAGGGCGCgguggcgccgucgUGGCGGg--- -3'
miRNA:   3'- aUCgUCGCCUUUCGCG-------------GCCGCCauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.